# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 2.79e-14 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 4.75e-14 c.46.1.4 114639 2gwfA 157 6.21e-14 c.46.1.4 135802 2hhgA 139 6.68e-14 1qb0A 211 6.97e-14 c.46.1.1 32699 2oucA 142 6.39e-13 1rhs 296 1.04e-12 1gmxA 108 1.09e-12 c.46.1.3 65355 2a2kA 175 1.27e-12 1yt8A 539 1.80e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 2.68e-12 c.46.1.2,c.46.1.2 107762,107763 2j6pA 152 3.17e-12 1t3kA 152 4.67e-12 c.46.1.1 106357 2fsxA 148 6.91e-12 1rhsA 296 1.07e-11 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 3.27e-11 c.46.1.1 123699 1okgA 373 2.57e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 4.27e-10 1wv9A 94 3.44e-08 2b4uA 335 2.231 2az4A 429 4.143 d.157.1.10 127597 2pt0A 340 4.989 2f46A 156 7.327 1yn9A 169 9.791 1kgsA 225 10.78 a.4.6.1,c.23.1.1 68596,68597 1mb3A 124 12.78 c.23.1.1 78907 1bf6A 291 12.80 c.1.9.3 29065 2fdxA 138 12.99 c.23.5.1 31192 1jayA 212 15.31 c.2.1.6 66478 2c46A 241 16.51 1oywA 523 18.76 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2b4pA 334 19.60 1ys7A 233 19.63 a.4.6.1,c.23.1.1 123961,123962 2hcrA 326 21.49 1oi7A 288 23.56 c.2.1.8,c.23.4.1 87049,87050 1mvoA 136 24.52 c.23.1.1 79513 1dkuA 317 25.70 c.61.1.2,c.61.1.2 34118,34119 5nul 138 26.03 2qr3A 140 26.04 2a5lA 200 27.77 c.23.5.8 126176 2qxyA 142 28.26 2qh8A 302 28.49 1u24A 337 28.61 c.45.1.4 112968 1rxdA 159 32.22 c.45.1.1 111959 3crnA 132 32.36 2yv1A 294 32.56 1i9sA 210 32.94 c.45.1.1 62099 2i6jA 161 34.00 1b00A 127 36.08 c.23.1.1 31122 2hxpA 155 39.40 2esbA 188 40.80 2omkA 231 40.84 1ns5A 155 40.89 c.116.1.3 80705 3cumA 302 40.98 1fpzA 212 41.50 c.45.1.1 59976 1dbwA 126 41.98 c.23.1.1 31095 1c3pA 375 42.21 c.42.1.2 32606 1yz4A 160 42.77 1ydgA 211 43.45 c.23.5.8 116614 1u0sY 118 46.84 c.23.1.1 107566 2v1xA 591 50.99 3cwvA 369 52.27 1xxpA 306 53.17 c.45.1.2 122423 1srrA 124 53.60 c.23.1.1 31110 1s8nA 205 53.60 c.23.1.1 105374 1h2eA 207 55.51 c.60.1.1 70857 2p5tB 253 55.77 2cftA 298 55.88 2p4dA 172 57.15 1vh0A 161 60.08 c.116.1.3 100626 1vl2A 421 61.01 c.26.2.1,d.210.1.1 108708,108709 3cfyA 137 61.50 2j3hA 345 62.97 5nulA 138 65.46 c.23.5.1 31191 2jerA 389 67.85 1qd1A 325 68.08 d.58.34.1,d.58.34.1 39493,39494 1jx6A 342 69.27 c.93.1.1 67406 1q6oA 216 69.61 c.1.2.3 95986 1ywfA 296 69.77 c.45.1.5 124144 1bifA 469 71.80 c.37.1.7,c.60.1.4 31961,34003 2jbaA 127 71.85 1zgzA 122 73.80 c.23.1.1 125065 1v4vA 376 74.09 c.87.1.3 100313 2c2xA 281 75.52 2q1sA 377 75.62 1zsqA 528 76.03 b.55.1.8,c.45.1.3 125616,125617 1p15A 253 76.52 c.45.1.2 93894 2v5xA 388 77.20 3b55A 451 78.92 1edzA 320 79.31 c.2.1.7,c.58.1.2 30287,33935 2ieaA 886 80.02 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1sffA 426 80.26 c.67.1.4 105482 1i3cA 149 80.54 c.23.1.1 71112 1xknA 355 80.65 d.126.1.6 115414 1gpjA 404 81.43 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2uytA 489 83.50 1wrmA 165 84.42 1zavA 180 85.98 2qvcA 313 86.09 3cg4A 142 86.18 1jaeA 471 86.45 b.71.1.1,c.1.8.1 27773,28760 1g2qA 187 86.62 c.61.1.1 65117 1u8tA 129 86.99 c.23.1.1 113192 1dz3A 130 87.73 c.23.1.1 31105 2ahrA 259 87.75 a.100.1.10,c.2.1.6 126775,126776