# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 4.05e-15 c.46.1.4 114639 2hhgA 139 8.43e-15 1e0cA 271 1.88e-14 c.46.1.2,c.46.1.2 32717,32718 2gwfA 157 2.62e-14 c.46.1.4 135802 2oucA 142 6.58e-14 1qb0A 211 6.72e-14 c.46.1.1 32699 2j6pA 152 1.68e-13 1rhs 296 2.76e-13 1rhsA 296 4.27e-13 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 5.09e-13 c.46.1.3 65355 2a2kA 175 6.09e-13 1t3kA 152 8.44e-13 c.46.1.1 106357 1yt8A 539 1.14e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 2.05e-12 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 3.52e-12 1ymkA 175 1.18e-11 c.46.1.1 123699 2eg4A 230 7.73e-11 1okgA 373 8.31e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 1.23e-08 2f46A 156 3.945 1bf6A 291 5.424 c.1.9.3 29065 1yn9A 169 6.435 1rxdA 159 10.25 c.45.1.1 111959 2cftA 298 13.57 2c46A 241 16.56 2b4uA 335 17.24 2fdxA 138 20.81 c.23.5.1 31192 1ns5A 155 22.72 c.116.1.3 80705 2i6jA 161 24.20 5nul 138 25.15 2c2xA 281 27.20 1i9sA 210 28.98 c.45.1.1 62099 1vh0A 161 31.17 c.116.1.3 100626 1fpzA 212 33.16 c.45.1.1 59976 1jx6A 342 33.20 c.93.1.1 67406 1d5rA 324 34.53 b.7.1.1,c.45.1.1 23181,32697 2oycA 306 35.51 2hcrA 326 36.14 1zsqA 528 36.82 b.55.1.8,c.45.1.3 125616,125617 1sffA 426 39.57 c.67.1.4 105482 1dbwA 126 40.70 c.23.1.1 31095 1b0aA 288 41.25 c.2.1.7,c.58.1.2 30286,33934 2qh8A 302 41.46 2omkA 231 43.17 2etvA 346 46.73 c.92.2.4 132372 2j9iA 421 47.06 2gcgA 330 49.07 1o6dA 163 49.46 c.116.1.3 92567 2j3hA 345 50.48 1dkuA 317 51.09 c.61.1.2,c.61.1.2 34118,34119 1zzwA 149 51.23 1ys7A 233 52.68 a.4.6.1,c.23.1.1 123961,123962 2b4pA 334 53.72 2q1sA 377 53.87 2f4dA 184 54.37 2z5lA 511 55.05 2esbA 188 55.15 1npyA 271 55.70 c.2.1.7,c.58.1.5 85995,85996 1oywA 523 56.83 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2az4A 429 57.58 d.157.1.10 127597 2imgA 151 59.44 1kgsA 225 59.91 a.4.6.1,c.23.1.1 68596,68597 1vhrA 184 60.49 c.45.1.1 32651 2hxpA 155 61.23 2q8pA 260 61.64 1jyeA 349 62.20 c.93.1.1 67455 2v1xA 591 63.40 2r0bA 154 63.82 2bkdN 134 65.57 1jayA 212 66.34 c.2.1.6 66478 2j16A 182 68.58 2p5tB 253 71.32 1yz4A 160 72.57 3cklA 298 75.16 1jerA 138 75.32 b.6.1.1 23022 1vl2A 421 76.14 c.26.2.1,d.210.1.1 108708,108709 2nrhA 219 76.51 c.55.1.13,c.55.1.13 138523,138524 2p4dA 172 77.31 1qo8A 566 79.74 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2qr3A 140 80.96 1xxpA 306 82.00 c.45.1.2 122423 2fqxA 318 83.45 2hcmA 164 84.54 1b00A 127 84.65 c.23.1.1 31122 1mb3A 124 85.47 c.23.1.1 78907 5nulA 138 86.19 c.23.5.1 31191 2av4A 162 86.24 1jztA 246 89.86 c.104.1.1 63319 2fh7A 595 89.87