# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e0cA	271	1.43e-16	c.46.1.2,c.46.1.2	32717,32718
1whbA	157	2.36e-16	c.46.1.4	114639
2gwfA	157	3.52e-16	c.46.1.4	135802
1qb0A	211	9.99e-16	c.46.1.1	32699
2hhgA	139	1.22e-15		
2oucA	142	3.41e-15		
1rhs	296	9.51e-15		
2j6pA	152	1.95e-14		
1gmxA	108	2.08e-14	c.46.1.3	65355
1yt8A	539	2.33e-14	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2a2kA	175	2.48e-14		
1t3kA	152	4.90e-14	c.46.1.1	106357
1uarA	285	8.52e-14	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	9.42e-14	c.46.1.2,c.46.1.2	32703,32704
2fsxA	148	2.10e-13		
1ymkA	175	1.27e-12	c.46.1.1	123699
1okgA	373	2.06e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.29e-11		
1wv9A	94	1.65e-09		
2b4uA	335	1.883		
2pt0A	340	2.993		
2f46A	156	4.742		
1yn9A	169	5.126		
2b4pA	334	6.267		
1u24A	337	10.92	c.45.1.4	112968
1bf6A	291	11.02	c.1.9.3	29065
1vh0A	161	11.94	c.116.1.3	100626
2fdxA	138	12.17	c.23.5.1	31192
1rxdA	159	13.31	c.45.1.1	111959
2omkA	231	17.99		
2az4A	429	18.96	d.157.1.10	127597
2a5lA	200	20.31	c.23.5.8	126176
2c46A	241	21.29		
1mb3A	124	21.58	c.23.1.1	78907
1o6dA	163	21.67	c.116.1.3	92567
3cwvA	369	23.11		
1vl2A	421	23.63	c.26.2.1,d.210.1.1	108708,108709
1ns5A	155	24.18	c.116.1.3	80705
5nul	138	24.35		
2z6rA	265	24.59		
2hcrA	326	26.11		
2hxpA	155	26.88		
2e7uA	424	27.39		
2i6jA	161	28.97		
1oywA	523	30.11	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
5nulA	138	30.74	c.23.5.1	31191
1ydgA	211	32.00	c.23.5.8	116614
2qh8A	302	36.50		
2r0bA	154	36.54		
2cftA	298	37.22		
2gcgA	330	38.72		
2esbA	188	39.29		
2jerA	389	40.30		
1oheA	348	42.68	c.45.1.1,c.45.1.1	87013,87014
1oi7A	288	44.41	c.2.1.8,c.23.4.1	87049,87050
2r7aA	256	45.52		
2yv1A	294	46.93		
2ohwA	133	48.62		
2nt2A	145	49.08		
2vq3A	215	51.30		
1kgsA	225	52.61	a.4.6.1,c.23.1.1	68596,68597
3b55A	451	56.39		
2p4dA	172	57.11		
2qr3A	140	57.29		
2e0tA	151	58.72		
1dkuA	317	58.84	c.61.1.2,c.61.1.2	34118,34119
2hcmA	164	60.31		
2gxaA	274	60.34		
2f4dA	184	61.79		
2j16A	182	61.79		
1jayA	212	62.63	c.2.1.6	66478
1ys7A	233	62.85	a.4.6.1,c.23.1.1	123961,123962
2imgA	151	63.63		
1zzwA	149	64.04		
2j3hA	345	65.55		
1ywfA	296	66.22	c.45.1.5	124144
1p15A	253	76.37	c.45.1.2	93894
2pcjA	224	77.11		
2c2xA	281	79.12		
1vhrA	184	81.91	c.45.1.1	32651
1r26A	125	81.94	c.47.1.1	96847
1senA	164	84.02	c.47.1.1	105465
1sffA	426	84.78	c.67.1.4	105482
2hdvA	111	85.77		
1edzA	320	86.13	c.2.1.7,c.58.1.2	30287,33935
1yz4A	160	89.11