# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gwfA 157 5.36e-17 c.46.1.4 135802 1whbA 157 5.97e-17 c.46.1.4 114639 1e0cA 271 1.80e-16 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 2.20e-16 2oucA 142 3.50e-16 1uarA 285 3.55e-16 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 1.26e-15 c.46.1.1 32699 1gmxA 108 1.41e-15 c.46.1.3 65355 1yt8A 539 2.20e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhs 296 2.45e-15 2j6pA 152 3.75e-15 1t3kA 152 8.64e-15 c.46.1.1 106357 2a2kA 175 4.99e-14 2fsxA 148 9.64e-14 1okgA 373 1.20e-13 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1rhsA 296 4.31e-13 c.46.1.2,c.46.1.2 32703,32704 2eg4A 230 2.66e-12 1ymkA 175 3.09e-12 c.46.1.1 123699 1wv9A 94 6.72e-10 2az4A 429 0.8484 d.157.1.10 127597 1sffA 426 1.530 c.67.1.4 105482 2pt0A 340 2.362 1jdwA 423 3.320 d.126.1.2 41129 2f46A 156 3.718 1yn9A 169 5.030 2d1yA 256 5.267 c.2.1.2 131151 1v4vA 376 5.903 c.87.1.3 100313 1mb3A 124 5.907 c.23.1.1 78907 2v6oA 596 8.574 2fdxA 138 9.148 c.23.5.1 31192 2gcgA 330 9.401 2c46A 241 10.19 1bf6A 291 10.42 c.1.9.3 29065 1rxdA 159 11.10 c.45.1.1 111959 1dkuA 317 11.53 c.61.1.2,c.61.1.2 34118,34119 1u24A 337 12.06 c.45.1.4 112968 2b4uA 335 12.35 1o6dA 163 13.28 c.116.1.3 92567 1c3pA 375 13.83 c.42.1.2 32606 1ns5A 155 13.89 c.116.1.3 80705 5nul 138 14.00 1yz4A 160 14.29 1qhfA 240 14.57 c.60.1.1 33960 2b4pA 334 15.22 2a5lA 200 17.20 c.23.5.8 126176 1vixA 420 19.58 c.56.5.4,d.58.19.1 100777,100778 2eplX 627 19.96 5nulA 138 20.11 c.23.5.1 31191 2nt2A 145 20.69 2og2A 359 20.84 1ydgA 211 21.26 c.23.5.8 116614 2vq3A 215 21.41 2p4dA 172 21.84 2yxlA 450 22.09 3cumA 302 23.36 2i6jA 161 25.69 3c8dA 403 27.58 2ax3A 502 28.77 c.72.1.4,c.104.1.1 127477,127478 1ys7A 233 29.59 a.4.6.1,c.23.1.1 123961,123962 2r0bA 154 30.75 1y1nA 291 31.49 2hxpA 155 32.98 1p15A 253 33.13 c.45.1.2 93894 2r7aA 256 34.36 1i3cA 149 34.47 c.23.1.1 71112 2ywmA 229 34.67 1vzwA 244 34.82 c.1.2.1 120553 2f4dA 184 35.31 1r6dA 337 36.07 c.2.1.2 97148 1eq2A 310 36.72 c.2.1.2 29814 2fh7A 595 36.95 1vhrA 184 39.17 c.45.1.1 32651 2p51A 333 39.41 1jaeA 471 39.47 b.71.1.1,c.1.8.1 27773,28760 1x1tA 260 43.03 c.2.1.2 121597 2e7uA 424 44.93 2ph3A 245 46.03 1u8tA 129 46.25 c.23.1.1 113192 1jx6A 342 47.37 c.93.1.1 67406 2q3zA 687 47.60 3crnA 132 47.72 1senA 164 47.91 c.47.1.1 105465 1b00A 127 48.29 c.23.1.1 31122 1v71A 323 48.46 c.79.1.1 119859 2nv2A 294 50.90 1svmA 377 51.51 c.37.1.20 112126 1mvoA 136 51.85 c.23.1.1 79513 2ob3A 330 52.11 2ganA 190 52.23 d.108.1.1 134889 1s8nA 205 52.99 c.23.1.1 105374 1l5oA 356 53.75 c.39.1.1 77711 1xx1A 285 53.80 1wwkA 307 54.08 2r11A 306 54.16 2j16A 182 54.66 2yv1A 294 54.67 1i9sA 210 55.94 c.45.1.1 62099 2e0tA 151 56.94 2hoeA 380 58.69 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2oodA 475 59.22 1vr0A 247 59.73 c.148.1.1 120428 1h2eA 207 60.24 c.60.1.1 70857 2hcmA 164 60.66 2qahA 303 62.71 1kgsA 225 62.73 a.4.6.1,c.23.1.1 68596,68597 2eihA 343 63.27 2imgA 151 63.36 1n2zA 245 64.66 c.92.2.2 79865 1fp1D 372 65.19 a.4.5.29,c.66.1.12 59939,59940 1pq4A 291 65.25 c.92.2.2 94995 2pqpA 421 65.26 2bs9A 503 66.49 b.71.1.2,c.1.8.3 129062,129063 1w2tA 432 66.64 b.29.1.19,b.67.2.3 120607,120608 2pcjA 224 66.66 1uteA 313 67.74 d.159.1.1 42078 2f1kA 279 68.10 a.100.1.12,c.2.1.6 132772,132773 2i5qA 415 70.06 2j5gA 263 70.72 1wlyA 333 71.48 2j4jA 226 71.57 2qxyA 142 71.68 1ywfA 296 74.06 c.45.1.5 124144 1jbeA 128 74.87 c.23.1.1 62845 1mv8A 436 75.65 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2nyvA 222 76.28 2etvA 346 76.56 c.92.2.4 132372 1n4aA 252 76.67 c.92.2.2 85317 1vpdA 299 77.26 a.100.1.1,c.2.1.6 113951,113952 2v5xA 388 77.67 1vh0A 161 78.50 c.116.1.3 100626 1w5qA 337 78.67 1oaoA 674 78.86 e.26.1.2 86744 1zzwA 149 80.16 1st9A 143 80.53 c.47.1.10 98987 3cklA 298 80.94 1ig3A 263 83.09 b.82.6.1,c.100.1.1 62358,62359 2bogX 286 83.20 2j5bA 348 83.29 2zf5O 497 83.99 2gdzA 267 84.28 c.2.1.2 135043 1te2A 226 84.63 c.108.1.6 106792 2b3zA 373 86.96 c.71.1.2,c.97.1.2 127807,127808 2hdvA 111 87.52 2cntA 160 87.63 1wn1A 356 87.73 1ekjA 221 88.38 c.53.2.1 33364 3cnbA 143 89.50