# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e0cA	271	3.46e-16	c.46.1.2,c.46.1.2	32717,32718
2gwfA	157	6.50e-16	c.46.1.4	135802
1whbA	157	7.53e-16	c.46.1.4	114639
1qb0A	211	2.03e-15	c.46.1.1	32699
2hhgA	139	3.76e-15		
2oucA	142	5.10e-15		
1rhs	296	1.04e-14		
1gmxA	108	3.04e-14	c.46.1.3	65355
2j6pA	152	3.21e-14		
1yt8A	539	3.66e-14	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2a2kA	175	5.52e-14		
1rhsA	296	9.46e-14	c.46.1.2,c.46.1.2	32703,32704
1t3kA	152	1.07e-13	c.46.1.1	106357
1uarA	285	1.26e-13	c.46.1.2,c.46.1.2	107762,107763
2fsxA	148	3.31e-13		
1okgA	373	1.48e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1ymkA	175	2.17e-12	c.46.1.1	123699
2eg4A	230	2.78e-11		
1wv9A	94	2.08e-09		
2b4uA	335	1.786		
2f46A	156	3.822		
2pt0A	340	3.832		
1yn9A	169	5.523		
1bf6A	291	6.191	c.1.9.3	29065
2b4pA	334	8.635		
2fdxA	138	10.27	c.23.5.1	31192
1vh0A	161	12.65	c.116.1.3	100626
1rxdA	159	13.11	c.45.1.1	111959
2az4A	429	13.20	d.157.1.10	127597
2hcrA	326	16.01		
1u24A	337	17.72	c.45.1.4	112968
5nul	138	18.20		
1o6dA	163	18.27	c.116.1.3	92567
2c46A	241	20.13		
1mb3A	124	20.67	c.23.1.1	78907
2e7uA	424	20.74		
2a5lA	200	21.13	c.23.5.8	126176
2i6jA	161	21.50		
1ns5A	155	23.83	c.116.1.3	80705
2qh8A	302	24.59		
2hxpA	155	25.76		
5nulA	138	26.06	c.23.5.1	31191
2omkA	231	30.11		
1oywA	523	30.30	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1vl2A	421	31.28	c.26.2.1,d.210.1.1	108708,108709
2r0bA	154	32.85		
1ydgA	211	33.94	c.23.5.8	116614
1jayA	212	34.24	c.2.1.6	66478
2esbA	188	36.19		
2z6rA	265	36.46		
3cwvA	369	36.60		
2gcgA	330	38.64		
2cftA	298	39.42		
2gxaA	274	40.86		
1oheA	348	41.07	c.45.1.1,c.45.1.1	87013,87014
2nt2A	145	41.67		
2yv1A	294	43.56		
3b55A	451	43.82		
2vq3A	215	44.91		
1kgsA	225	45.60	a.4.6.1,c.23.1.1	68596,68597
1dkuA	317	47.86	c.61.1.2,c.61.1.2	34118,34119
1oi7A	288	48.93	c.2.1.8,c.23.4.1	87049,87050
2f4dA	184	49.20		
2hcmA	164	49.45		
2e0tA	151	52.10		
2p4dA	172	53.90		
2jerA	389	54.01		
2qr3A	140	54.75		
2r7aA	256	55.25		
1zzwA	149	57.17		
2j16A	182	57.42		
1sffA	426	59.12	c.67.1.4	105482
2pcjA	224	60.24		
1fpzA	212	61.10	c.45.1.1	59976
1p15A	253	63.55	c.45.1.2	93894
1vhrA	184	63.87	c.45.1.1	32651
2imgA	151	65.13		
1ys7A	233	65.75	a.4.6.1,c.23.1.1	123961,123962
1senA	164	71.10	c.47.1.1	105465
1yz4A	160	73.14		
1c3pA	375	73.66	c.42.1.2	32606
1zsqA	528	75.96	b.55.1.8,c.45.1.3	125616,125617
2ohwA	133	77.38		
2hdvA	111	78.44		
2j3hA	345	80.50		
1qd1A	325	81.61	d.58.34.1,d.58.34.1	39493,39494
1ywfA	296	83.91	c.45.1.5	124144
2nvrA	423	88.87		
1vi2A	300	89.55	c.2.1.7,c.58.1.5	100726,100727
1svmA	377	89.61	c.37.1.20	112126