# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	1.98e-18	c.46.1.4	114639
2gwfA	157	4.33e-18	c.46.1.4	135802
1e0cA	271	1.91e-17	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	2.80e-17	c.46.1.1	32699
2hhgA	139	3.67e-17		
2oucA	142	1.06e-16		
1gmxA	108	9.52e-16	c.46.1.3	65355
2j6pA	152	9.72e-16		
1t3kA	152	1.74e-15	c.46.1.1	106357
2a2kA	175	1.78e-15		
1rhs	296	2.15e-15		
1yt8A	539	2.41e-15	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1uarA	285	8.28e-15	c.46.1.2,c.46.1.2	107762,107763
2fsxA	148	1.16e-14		
1rhsA	296	2.60e-14	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	8.25e-14	c.46.1.1	123699
1okgA	373	2.42e-13	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.60e-12		
1wv9A	94	1.53e-10		
2b4uA	335	3.384		
2f46A	156	5.353		
2pt0A	340	5.527		
1yn9A	169	9.473		
1u24A	337	10.50	c.45.1.4	112968
2az4A	429	11.08	d.157.1.10	127597
1jayA	212	11.76	c.2.1.6	66478
2a5lA	200	16.49	c.23.5.8	126176
2b4pA	334	17.54		
1bf6A	291	17.57	c.1.9.3	29065
2c46A	241	19.25		
1qd1A	325	22.37	d.58.34.1,d.58.34.1	39493,39494
2fdxA	138	22.84	c.23.5.1	31192
1ydgA	211	23.56	c.23.5.8	116614
1vl2A	421	26.00	c.26.2.1,d.210.1.1	108708,108709
2gcgA	330	29.17		
2omkA	231	29.93		
2yv1A	294	30.02		
2i6jA	161	31.67		
2hxpA	155	32.30		
2e7uA	424	35.00		
2qh8A	302	36.79		
2c2xA	281	36.89		
1oi7A	288	38.21	c.2.1.8,c.23.4.1	87049,87050
1qsmA	152	39.28	d.108.1.1	40808
1mb3A	124	41.48	c.23.1.1	78907
2gxaA	274	44.25		
2jerA	389	45.73		
2bkdN	134	45.73		
2b5gA	171	46.52	d.108.1.1	127892
1rxdA	159	47.59	c.45.1.1	111959
3cwvA	369	48.76		
1bifA	469	48.77	c.37.1.7,c.60.1.4	31961,34003
2esbA	188	49.27		
1dkuA	317	49.94	c.61.1.2,c.61.1.2	34118,34119
2ohwA	133	50.60		
1kgsA	225	51.99	a.4.6.1,c.23.1.1	68596,68597
1vh0A	161	52.12	c.116.1.3	100626
5nulA	138	52.16	c.23.5.1	31191
2qr3A	140	53.42		
2p4dA	172	54.70		
2fe7A	166	57.47	d.108.1.1	133325
2vq3A	215	58.10		
2hcrA	326	58.12		
1oywA	523	58.33	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
3cklA	298	60.57		
1g2qA	187	61.85	c.61.1.1	65117
1yz4A	160	62.83		
2cftA	298	65.24		
2cntA	160	66.00		
5nul	138	67.22		
2nvrA	423	67.90		
1b00A	127	70.04	c.23.1.1	31122
1i9sA	210	70.33	c.45.1.1	62099
1sffA	426	70.92	c.67.1.4	105482
1ys7A	233	74.38	a.4.6.1,c.23.1.1	123961,123962
2j16A	182	75.14		
1jerA	138	81.18	b.6.1.1	23022
3cumA	302	81.51		
1zavA	180	82.31		
1q6oA	216	84.70	c.1.2.3	95986
2jz8A	87	87.34		
2oafA	151	88.07		
2imgA	151	88.85		
2nt2A	145	89.27