# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	3.41e-17	c.46.1.4	114639
1e0cA	271	8.83e-17	c.46.1.2,c.46.1.2	32717,32718
2gwfA	157	1.02e-16	c.46.1.4	135802
2hhgA	139	1.26e-16		
1qb0A	211	1.79e-16	c.46.1.1	32699
2oucA	142	4.00e-16		
2j6pA	152	3.74e-15		
1rhs	296	3.79e-15		
2a2kA	175	4.24e-15		
1gmxA	108	4.34e-15	c.46.1.3	65355
1yt8A	539	7.13e-15	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1t3kA	152	1.04e-14	c.46.1.1	106357
1uarA	285	2.58e-14	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	3.45e-14	c.46.1.2,c.46.1.2	32703,32704
2fsxA	148	4.11e-14		
1ymkA	175	1.66e-13	c.46.1.1	123699
1okgA	373	3.80e-13	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	4.41e-12		
1wv9A	94	4.14e-10		
2b4uA	335	2.513		
2f46A	156	3.452		
2pt0A	340	5.564		
1yn9A	169	6.736		
2c46A	241	9.655		
2b4pA	334	12.84		
1bf6A	291	12.94	c.1.9.3	29065
1u24A	337	13.86	c.45.1.4	112968
2fdxA	138	14.56	c.23.5.1	31192
2omkA	231	17.42		
2az4A	429	17.63	d.157.1.10	127597
2a5lA	200	17.67	c.23.5.8	126176
1jayA	212	19.00	c.2.1.6	66478
1vl2A	421	19.05	c.26.2.1,d.210.1.1	108708,108709
1oywA	523	20.51	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2hxpA	155	21.95		
2i6jA	161	22.85		
1ydgA	211	27.00	c.23.5.8	116614
2esbA	188	28.47		
2e7uA	424	29.50		
1rxdA	159	31.89	c.45.1.1	111959
1oi7A	288	33.63	c.2.1.8,c.23.4.1	87049,87050
3cklA	298	37.27		
1mb3A	124	37.73	c.23.1.1	78907
3cwvA	369	39.65		
1dkuA	317	39.80	c.61.1.2,c.61.1.2	34118,34119
1i9sA	210	39.91	c.45.1.1	62099
2c2xA	281	40.37		
1yz4A	160	41.68		
1qd1A	325	41.92	d.58.34.1,d.58.34.1	39493,39494
2gcgA	330	42.47		
1sffA	426	42.71	c.67.1.4	105482
1zzwA	149	43.63		
2z6rA	265	44.21		
2jerA	389	44.75		
2p4dA	172	45.72		
2cftA	298	46.76		
2hcrA	326	47.93		
1bifA	469	48.45	c.37.1.7,c.60.1.4	31961,34003
2yv1A	294	48.47		
1vh0A	161	51.48	c.116.1.3	100626
5nul	138	52.46		
2imgA	151	53.93		
2bkdN	134	56.38		
2gxaA	274	58.39		
2j3hA	345	58.63		
2qh8A	302	58.79		
2nt2A	145	60.54		
1qsmA	152	61.02	d.108.1.1	40808
1zavA	180	63.37		
1ywfA	296	63.74	c.45.1.5	124144
5nulA	138	66.37	c.23.5.1	31191
1zsqA	528	66.72	b.55.1.8,c.45.1.3	125616,125617
2r0bA	154	68.32		
2ohwA	133	68.93		
2hcmA	164	69.72		
2j16A	182	71.83		
1kgsA	225	72.08	a.4.6.1,c.23.1.1	68596,68597
1cex	214	72.64		
1c4oA	664	73.62	c.37.1.19,c.37.1.19	32415,32416
2fe7A	166	73.66	d.108.1.1	133325
1g2qA	187	75.12	c.61.1.1	65117
2vq3A	215	76.77		
2p5tB	253	77.34		
1p15A	253	78.16	c.45.1.2	93894
1senA	164	81.78	c.47.1.1	105465
1oheA	348	82.00	c.45.1.1,c.45.1.1	87013,87014
2v1xA	591	82.56		
2qr3A	140	82.67		
1dbwA	126	86.22	c.23.1.1	31095
1wrmA	165	86.58		
1ns5A	155	87.57	c.116.1.3	80705