# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 6.55e-17 c.46.1.4 114639 1e0cA 271 9.14e-17 c.46.1.2,c.46.1.2 32717,32718 2gwfA 157 1.34e-16 c.46.1.4 135802 2hhgA 139 3.19e-16 1qb0A 211 5.10e-16 c.46.1.1 32699 2oucA 142 1.35e-15 1gmxA 108 8.12e-15 c.46.1.3 65355 1rhs 296 8.88e-15 2a2kA 175 1.04e-14 2j6pA 152 1.07e-14 1yt8A 539 1.77e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 1.81e-14 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 2.46e-14 c.46.1.1 106357 2fsxA 148 8.58e-14 1rhsA 296 1.16e-13 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 4.32e-13 c.46.1.1 123699 1okgA 373 5.08e-13 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 5.96e-12 1wv9A 94 6.48e-10 2b4uA 335 1.383 2pt0A 340 2.998 2f46A 156 3.862 1yn9A 169 6.856 2b4pA 334 10.46 1bf6A 291 11.38 c.1.9.3 29065 2c46A 241 11.58 1u24A 337 14.35 c.45.1.4 112968 2fdxA 138 14.80 c.23.5.1 31192 2i6jA 161 17.21 2a5lA 200 17.43 c.23.5.8 126176 2az4A 429 17.73 d.157.1.10 127597 1qd1A 325 20.63 d.58.34.1,d.58.34.1 39493,39494 1jayA 212 21.84 c.2.1.6 66478 1mb3A 124 24.26 c.23.1.1 78907 1dkuA 317 24.74 c.61.1.2,c.61.1.2 34118,34119 2hxpA 155 24.91 1ydgA 211 26.70 c.23.5.8 116614 2e7uA 424 29.12 2jerA 389 29.39 1vl2A 421 31.65 c.26.2.1,d.210.1.1 108708,108709 2c2xA 281 32.12 2esbA 188 34.04 1rxdA 159 37.05 c.45.1.1 111959 2j3hA 345 37.19 1oywA 523 37.58 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1oi7A 288 40.79 c.2.1.8,c.23.4.1 87049,87050 2yv1A 294 42.73 1yz4A 160 43.08 2cftA 298 45.20 5nul 138 45.62 5nulA 138 47.58 c.23.5.1 31191 2gxaA 274 47.97 2qh8A 302 48.13 1i9sA 210 49.63 c.45.1.1 62099 2p4dA 172 50.47 1vh0A 161 51.39 c.116.1.3 100626 3cwvA 369 51.60 1kgsA 225 53.78 a.4.6.1,c.23.1.1 68596,68597 1g2qA 187 54.33 c.61.1.1 65117 2hcrA 326 56.31 1bifA 469 56.49 c.37.1.7,c.60.1.4 31961,34003 2qr3A 140 56.59 2gcgA 330 56.60 1ys7A 233 56.84 a.4.6.1,c.23.1.1 123961,123962 3cklA 298 57.11 1zzwA 149 57.95 1sffA 426 58.81 c.67.1.4 105482 1ywfA 296 59.35 c.45.1.5 124144 1wrmA 165 59.45 2j16A 182 59.73 2omkA 231 60.59 1c4oA 664 62.73 c.37.1.19,c.37.1.19 32415,32416 1fpzA 212 63.38 c.45.1.1 59976 1tvmA 113 65.27 2nt2A 145 67.02 2pcjA 224 67.32 2imgA 151 68.08 3cumA 302 73.09 1p15A 253 73.09 c.45.1.2 93894 1mvoA 136 73.45 c.23.1.1 79513 2r7aA 256 73.48 1b00A 127 73.52 c.23.1.1 31122 2bkdN 134 73.72 1zavA 180 74.41 1q6oA 216 76.36 c.1.2.3 95986 2r0bA 154 77.57 1xknA 355 78.55 d.126.1.6 115414 2fe7A 166 78.86 d.108.1.1 133325 2qxyA 142 80.77 3crnA 132 82.77 2v1xA 591 83.58 2nvrA 423 84.56 1s8nA 205 84.77 c.23.1.1 105374 2oafA 151 85.15 3b55A 451 85.22 2b5gA 171 87.36 d.108.1.1 127892 1wn1A 356 88.30