# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	2.74e-13	c.46.1.4	114639
2hhgA	139	7.30e-13		
2gwfA	157	8.88e-13	c.46.1.4	135802
2oucA	142	1.78e-12		
1e0cA	271	3.30e-12	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	4.53e-12	c.46.1.1	32699
2j6pA	152	1.35e-11		
2a2kA	175	2.69e-11		
1gmxA	108	4.76e-11	c.46.1.3	65355
1uarA	285	8.62e-11	c.46.1.2,c.46.1.2	107762,107763
2fsxA	148	9.38e-11		
1t3kA	152	1.18e-10	c.46.1.1	106357
1rhs	296	1.90e-10		
1rhsA	296	2.69e-10	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	3.95e-10	c.46.1.1	123699
1yt8A	539	8.61e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2eg4A	230	1.77e-08		
1okgA	373	2.42e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	3.03e-06		
2f46A	156	2.908		
1yn9A	169	3.082		
2gcgA	330	12.44		
1rxdA	159	16.55	c.45.1.1	111959
1bf6A	291	22.03	c.1.9.3	29065
2b4uA	335	23.32		
2r0bA	154	23.86		
2nt2A	145	25.77		
1zzwA	149	27.93		
2i6jA	161	28.10		
2hcmA	164	28.58		
1i9sA	210	29.13	c.45.1.1	62099
2esbA	188	31.17		
2imgA	151	31.26		
2jbaA	127	31.30		
1b00A	127	31.98	c.23.1.1	31122
2hxpA	155	32.35		
2a5lA	200	33.08	c.23.5.8	126176
2p4dA	172	33.30		
2z6rA	265	33.54		
2qr3A	140	33.88		
2omkA	231	34.37		
2ieaA	886	39.07	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2b4pA	334	39.36		
1fpzA	212	40.09	c.45.1.1	59976
2f4dA	184	45.13		
1j7xA	302	47.54	c.14.1.2	66425
1oheA	348	48.77	c.45.1.1,c.45.1.1	87013,87014
2j6iA	364	51.38		
1mb3A	124	52.28	c.23.1.1	78907
1ys7A	233	53.59	a.4.6.1,c.23.1.1	123961,123962
1ydgA	211	53.59	c.23.5.8	116614
2c46A	241	53.83		
1dbwA	126	54.40	c.23.1.1	31095
1cex	214	56.30		
1ytlA	174	56.94	c.31.1.6	124008
2hlkA	255	57.23		
2vq3A	215	61.19		
2uvjA	408	62.33		
3cnbA	143	62.39		
2czqA	205	64.63		
2qh8A	302	65.16		
1yz4A	160	65.43		
1u0sY	118	67.37	c.23.1.1	107566
1p5dX	463	67.49	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
1mvoA	136	68.24	c.23.1.1	79513
2hcrA	326	68.27		
2pocA	367	69.04		
1wrmA	165	69.73		
2av4A	162	69.78		
2j16A	182	70.84		
1j5xA	342	74.68	c.80.1.1	71591
1vhrA	184	74.98	c.45.1.1	32651
3cklA	298	75.70		
1zsqA	528	75.98	b.55.1.8,c.45.1.3	125616,125617
2q1sA	377	76.29		
2dbqA	334	78.74		
1kgsA	225	80.63	a.4.6.1,c.23.1.1	68596,68597
1w85B	324	81.09	c.36.1.7,c.48.1.2	114336,114337
1zgzA	122	81.69	c.23.1.1	125065
1sffA	426	82.20	c.67.1.4	105482
2pl1A	121	83.74		
1c9kA	180	84.64	c.37.1.11	32363
1o6dA	163	88.77	c.116.1.3	92567
1jx6A	342	88.81	c.93.1.1	67406
2cftA	298	89.69