# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	1.46e-12	c.46.1.4	114639
2gwfA	157	2.28e-12	c.46.1.4	135802
2hhgA	139	2.86e-12		
1e0cA	271	6.86e-12	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	9.04e-12	c.46.1.1	32699
2oucA	142	9.85e-12		
2j6pA	152	1.67e-11		
1rhs	296	6.37e-11		
1uarA	285	9.81e-11	c.46.1.2,c.46.1.2	107762,107763
2a2kA	175	1.28e-10		
1gmxA	108	1.35e-10	c.46.1.3	65355
1rhsA	296	1.38e-10	c.46.1.2,c.46.1.2	32703,32704
1t3kA	152	2.37e-10	c.46.1.1	106357
1yt8A	539	4.64e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	6.15e-10		
1ymkA	175	2.04e-09	c.46.1.1	123699
2eg4A	230	3.33e-09		
1okgA	373	8.49e-09	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	3.64e-07		
1yn9A	169	3.834		
2f46A	156	4.187		
2b4uA	335	5.976		
1rxdA	159	12.31	c.45.1.1	111959
1ydgA	211	18.56	c.23.5.8	116614
1xxpA	306	19.31	c.45.1.2	122423
1musA	477	20.42	c.55.3.4	79494
3cklA	298	24.29		
2r0bA	154	26.22		
2gcgA	330	27.08		
2b4pA	334	27.78		
1d5rA	324	28.66	b.7.1.1,c.45.1.1	23181,32697
2c46A	241	31.79		
1bf6A	291	32.18	c.1.9.3	29065
1i9sA	210	33.80	c.45.1.1	62099
2i6jA	161	35.02		
1oheA	348	36.97	c.45.1.1,c.45.1.1	87013,87014
2p4dA	172	37.48		
3b2yA	275	38.01		
2omkA	231	39.02		
1zsqA	528	39.51	b.55.1.8,c.45.1.3	125616,125617
2a5lA	200	39.83	c.23.5.8	126176
1b00A	127	40.73	c.23.1.1	31122
2esbA	188	43.49		
2hcmA	164	44.55		
2fdxA	138	45.04	c.23.5.1	31192
2hxpA	155	45.07		
1gnlA	544	45.43	e.26.1.1	70287
2z6rA	265	47.13		
2imgA	151	47.61		
2nt2A	145	47.99		
2j16A	182	52.77		
1c3pA	375	53.66	c.42.1.2	32606
5nul	138	54.42		
1fpzA	212	57.80	c.45.1.1	59976
2nvrA	423	59.45		
2czqA	205	60.29		
2pt0A	340	61.19		
2pa5A	314	61.69		
1edzA	320	62.64	c.2.1.7,c.58.1.2	30287,33935
5nulA	138	65.54	c.23.5.1	31191
1p15A	253	67.15	c.45.1.2	93894
1mvoA	136	67.49	c.23.1.1	79513
1sffA	426	68.67	c.67.1.4	105482
2fh7A	595	69.79		
1zzwA	149	70.09		
1lyvA	306	71.42	c.45.1.2	74348
2vc7A	314	71.73		
2nyvA	222	73.72		
2etvA	346	74.77	c.92.2.4	132372
1dkuA	317	74.99	c.61.1.2,c.61.1.2	34118,34119
2no4A	240	75.42		
3b55A	451	75.75		
1qsmA	152	76.57	d.108.1.1	40808
1dbwA	126	77.97	c.23.1.1	31095
2qh8A	302	81.18		
2p6xA	309	81.82		
1ns5A	155	85.64	c.116.1.3	80705
2f4dA	184	86.10		
1j5xA	342	86.38	c.80.1.1	71591
2c71A	216	88.29	c.6.2.3	130017
3c10A	423	89.84