# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 8.34e-10 1gmxA 108 2.65e-09 c.46.1.3 65355 1whbA 157 5.21e-09 c.46.1.4 114639 2gwfA 157 1.22e-08 c.46.1.4 135802 1qb0A 211 2.34e-08 c.46.1.1 32699 2a2kA 175 5.10e-08 1e0cA 271 6.55e-08 c.46.1.2,c.46.1.2 32717,32718 2oucA 142 6.85e-08 1rhs 296 7.99e-08 1yt8A 539 8.30e-08 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 1.16e-07 c.46.1.2,c.46.1.2 32703,32704 1uarA 285 1.21e-07 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 1.88e-07 c.46.1.1 123699 2j6pA 152 1.14e-06 2eg4A 230 4.68e-06 1okgA 373 1.74e-05 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fsxA 148 3.05e-05 1t3kA 152 6.59e-05 c.46.1.1 106357 1wv9A 94 0.000428 1i9sA 210 0.3553 c.45.1.1 62099 3cvjA 243 1.338 2cukA 311 2.143 2c46A 241 2.431 2gcgA 330 3.001 2b4uA 335 3.321 2p5tB 253 4.100 2e55A 208 4.133 1oheA 348 5.740 c.45.1.1,c.45.1.1 87013,87014 2g76A 335 6.442 1o66A 275 7.274 c.1.12.8 92547 1ygyA 529 9.96 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1li4A 432 10.10 c.2.1.4,c.23.12.3 84616,84617 1wd5A 208 10.65 c.61.1.1 114524 1sc6A 404 10.77 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1t5oA 351 10.81 c.124.1.5 106459 2cftA 298 11.38 1rkqA 282 12.09 c.108.1.10 97621 1u24A 337 12.74 c.45.1.4 112968 1wwkA 307 13.38 2b0cA 206 13.44 c.108.1.2 127633 1gdhA 320 13.52 c.2.1.4,c.23.12.1 30095,31355 2fi1A 190 14.91 c.108.1.3 133508 2ehjA 208 16.46 2oycA 306 17.96 1bf6A 291 18.30 c.1.9.3 29065 1d5rA 324 18.38 b.7.1.1,c.45.1.1 23181,32697 1edzA 320 19.89 c.2.1.7,c.58.1.2 30287,33935 1t6cA 315 20.11 c.55.1.8,c.55.1.8 106558,106559 2pt0A 340 20.18 1zsqA 528 20.27 b.55.1.8,c.45.1.3 125616,125617 2eklA 313 20.67 2f46A 156 20.93 2i6jA 161 22.16 2egxA 269 22.25 1v8bA 479 22.42 c.2.1.4,c.23.12.3 113564,113565 1qb7A 236 24.09 c.61.1.1 34087 1ly1A 181 24.34 c.37.1.1 74334 1xcbA 211 24.56 a.4.5.38,c.2.1.12 109552,109553 2dbqA 334 28.17 2z1dA 372 28.63 2qiwA 255 29.54 1xrsB 262 30.10 c.23.6.1,d.230.4.1 115884,115885 1ymqA 261 30.23 c.108.1.10 123707 1lsuA 147 31.78 c.2.1.9 74250 2hcfA 234 32.94 c.108.1.6 136333 1o08A 221 33.06 c.108.1.6 86525 1v7zA 260 33.79 c.125.1.1 100488 2ah5A 210 34.06 c.108.1.6 126742 2pibA 216 34.18 1v9sA 208 34.92 c.61.1.1 119894 1l7mA 211 35.75 c.108.1.4 73664 1woqA 267 36.87 c.55.1.10,c.55.1.10 109462,109463 1mw9X 592 37.36 e.10.1.1 91480 2rbkA 261 37.39 2c2xA 281 37.54 1a4iA 301 37.72 c.2.1.7,c.58.1.2 30278,33926 1pjcA 361 37.94 c.2.1.4,c.23.12.2 30101,31361 2omkA 231 40.64 1rlmA 271 41.11 c.108.1.10 111860 2hx1A 284 41.34 1yn9A 169 41.56 2ozhA 142 41.72 1qh5A 260 41.89 d.157.1.2 42057 1eq2A 310 42.23 c.2.1.2 29814 2dy0A 190 43.67 2dxnA 274 44.53 1ecfA 504 45.30 c.61.1.1,d.153.1.1 34053,41820 1nslA 184 45.94 d.108.1.1 86137 2hdoA 209 45.99 c.108.1.6 136345 2fdrA 229 47.37 c.108.1.6 133319 1m3uA 264 47.70 c.1.12.8 84784 1c3pA 375 49.72 c.42.1.2 32606 2vhxA 377 49.93 1vmkA 277 50.06 c.56.2.1 113680 2hi0A 240 50.82 1f3lA 321 51.74 c.66.1.6 59630 2hmvA 144 52.35 c.2.1.9 136615 2hszA 243 53.47 c.108.1.6 136726 2qvcA 313 53.52 1bd3A 243 53.73 c.61.1.1 34098 2g1uA 155 55.41 1ytlA 174 55.45 c.31.1.6 124008 1vpvA 300 56.47 c.119.1.1 113975 2vojA 371 57.75 1auiA 521 58.63 d.159.1.3 42085 1qp8A 303 58.67 c.2.1.4,c.23.12.1 30092,31352 2b82A 211 60.64 c.108.1.12 128057 2bsqA 146 62.19 c.120.1.1 129098 1ujnA 348 62.63 e.22.1.1 99460 1nriA 306 63.58 c.80.1.3 86123 2om6A 235 64.31 1fpzA 212 64.32 c.45.1.1 59976 1ydnA 295 66.84 1xr4A 509 66.86 c.124.1.2,c.124.1.2 115860,115861 1rmwA 212 67.43 2aa4A 289 68.69 c.55.1.10,c.55.1.10 126465,126466 1qgoA 264 68.97 c.92.1.2 35596 1nrwA 288 69.70 c.108.1.10 86128 1vicA 262 70.53 c.68.1.13 100756 1b0aA 288 72.43 c.2.1.7,c.58.1.2 30286,33934 2d0iA 333 76.21 3b3fA 341 78.30 1a0rP 245 78.80 c.47.1.6 33054 1o1zA 234 79.10 c.1.18.3 86555 1vd6A 224 79.24 c.1.18.3 119991 2qahA 303 80.20 2v74B 346 81.10 1p9eA 331 82.60 d.157.1.5 104088 1qgvA 142 85.16 c.47.1.8 33056 1l5wA 796 85.43 c.87.1.4 73605 2qhqA 125 85.43 2no4A 240 86.74 1ak2A 233 88.50 c.37.1.1,g.41.2.1 31894,45195 1x3mA 415 89.92 c.55.1.2,c.55.1.2 121664,121665 2rjoA 332 89.95