Best Alignments for TR389

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2oucA	3.1470e-17	2oucA/TR389-2oucA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uarA	5.8616e-17	1uarA/TR389-1uarA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1rhsA	1.3739e-16	1rhsA/TR389-1rhsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
2gwfA	2.8403e-16	2gwfA/TR389-2gwfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4
1gmxA	3.2996e-16	1gmxA/TR389-1gmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.3
1c25	4.9061e-16	1c25/TR389-1c25-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1e0cA	5.8759e-16	1e0cA/TR389-1e0cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
2j6pA	6.0786e-16	2j6pA/TR389-2j6pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1whbA	6.1530e-16	1whbA/TR389-1whbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4
1qb0A	6.7982e-16	1qb0A/TR389-1qb0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1yt8A	7.1095e-16	1yt8A/TR389-1yt8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
2hhgA	8.9124e-16	2hhgA/TR389-2hhgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a2kA	4.2396e-15	2a2kA/TR389-2a2kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1okgA	5.3115e-15	1okgA/TR389-1okgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 d.26.1.3
1t3kA	5.8073e-15	1t3kA/TR389-1t3kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1rhs	1.5081e-14	1rhs/TR389-1rhs-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ymkA	1.9919e-14	1ymkA/TR389-1ymkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
2fsxA	2.1851e-14	2fsxA/TR389-2fsxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eg4A	4.0886e-10	2eg4A/TR389-2eg4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wv9A	2.3826e-09	1wv9A/TR389-1wv9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001