# List of top-scoring protein chains for TR389.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1urhA 280 3.48e-13 c.46.1.2,c.46.1.2 99829,99830 1ymkA 175 4.26e-12 c.46.1.1 123699 1cwtA 178 4.27e-12 c.46.1.1 32702 1qb0A 211 4.35e-12 c.46.1.1 32699 1c25A 161 6.06e-12 c.46.1.1 32698 2ifdA 175 6.97e-12 2ifvA 175 8.21e-12 2a2kA 175 2.26e-11 1uarA 285 3.09e-11 c.46.1.2,c.46.1.2 107762,107763 1e0cA 271 5.83e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 3.19e-10 c.46.1.2,c.46.1.2 32703,32704 1dp2A 293 3.20e-10 c.46.1.2,c.46.1.2 32705,32706 1rhdA 293 3.39e-10 c.46.1.2,c.46.1.2 32715,32716 1hzmA 154 6.00e-10 c.46.1.1 65975 2oucA 142 6.09e-09 1gmxA 108 1.90e-07 c.46.1.3 65355 2eg4A 230 2.70e-07 1okgA 373 3.27e-07 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1tq1A 129 4.37e-07 c.46.1.3 107198 2hhgA 139 5.21e-07 1whbA 157 1.89e-06 c.46.1.4 114639 2gwfA 157 1.90e-06 c.46.1.4 135802 1t3kA 152 2.31e-06 c.46.1.1 106357 1yt8A 539 2.58e-06 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6pA 152 2.77e-06 1qxnA 137 4.84e-06 c.46.1.3 96537 2k0zA 110 9.69e-06 2fsxA 148 0.01165 1wv9A 94 0.02171 1veeA 134 1.930 1ekjA 221 8.535 c.53.2.1 33364 1x31B 404 11.90 1mj1A 405 17.75 i.1.1.1 79175 1eo8H 217 31.20 b.1.1.1,b.1.1.2 20295,21287 2cyeA 133 33.51 d.38.1.1 131021 2gagB 405 38.39 2e5oA 154 43.07 2fdrA 229 45.39 c.108.1.6 133319 1r4mB 431 46.01 c.111.1.2 97000 1tt5B 434 46.06 c.111.1.2 107292 1yovB 444 46.93 c.111.1.2 123786 2dxnA 274 47.78 2q47A 151 50.53 c.45.1.1 139827 2ys4A 122 51.25 1aipA 405 55.49 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2c77A 405 55.99 b.43.3.1,b.44.1.1,c.37.1.8 130034,130035,130036 1exmA 405 56.49 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1eftA 405 56.80 b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1aw2A 256 61.98 c.1.1.1 28523 2yvtA 260 64.38 2c78A 405 73.45 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1b23P 405 74.24 b.43.3.1,b.44.1.1,c.37.1.8 25689,25729,32124 2nvuB 805 79.53 c.111.1.2,c.94.1.1 138661,138662 1q2yA 140 81.99 d.108.1.1 95655 1ma3A 253 86.59 c.31.1.5 78883