# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	4.73e-14	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1whbA	157	1.25e-13	c.46.1.4	114639
1e0cA	271	2.16e-13	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	7.91e-13		
1uarA	285	8.62e-13	c.46.1.2,c.46.1.2	107762,107763
2oucA	142	9.39e-13		
1gmxA	108	1.76e-12	c.46.1.3	65355
2gwfA	157	2.25e-12	c.46.1.4	135802
1rhsA	296	3.45e-12	c.46.1.2,c.46.1.2	32703,32704
1qb0A	211	3.72e-12	c.46.1.1	32699
2j6pA	152	3.95e-12		
1ymkA	175	4.42e-12	c.46.1.1	123699
1c25	161	4.94e-12		
1t3kA	152	6.54e-12	c.46.1.1	106357
2a2kA	175	8.77e-12		
1rhs	296	1.16e-11		
2fsxA	148	2.32e-11		
1okgA	373	4.57e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	2.28e-09		
1wv9A	94	1.08e-08		
2f46A	156	5.411		
2c3zA	222	7.046		
1qgoA	264	9.649	c.92.1.2	35596
1su8A	636	11.09	e.26.1.2	98999
2b4pA	334	11.32		
2c46A	241	12.22		
2b4uA	335	12.44		
1f60A	458	13.99	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
3b2yA	275	14.49		
1yz4A	160	18.41		
1ywfA	296	20.46	c.45.1.5	124144
1yn9A	169	21.04		
2ph5A	480	21.37		
1d2eA	397	21.88	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1d5rA	324	23.80	b.7.1.1,c.45.1.1	23181,32697
1wrmA	165	25.95		
1npyA	271	26.93	c.2.1.7,c.58.1.5	85995,85996
2dy0A	190	27.47		
1y0eA	223	27.85	c.1.2.5	116297
2p1zA	180	27.98		
1lh0A	213	28.84	c.61.1.1	73896
2a5lA	200	29.17	c.23.5.8	126176
1jnyA	435	29.26	b.43.3.1,b.44.1.1,c.37.1.8	66982,66983,66984
1zclA	180	29.51		
2j16A	182	32.50		
1zrnA	232	34.18	c.108.1.1	43323
1zsqA	528	34.90	b.55.1.8,c.45.1.3	125616,125617
1j7xA	302	35.79	c.14.1.2	66425
2cftA	298	38.59		
2ps1A	226	39.08		
1fpzA	212	43.55	c.45.1.1	59976
1qb7A	236	43.84	c.61.1.1	34087
2hxpA	155	44.33		
2eo5A	419	45.07		
1oroA	213	45.52	c.61.1.1	34093
2i6jA	161	45.52		
1zckA	154	48.17		
2no4A	240	49.17		
1yloA	348	49.19	b.49.3.1,c.56.5.4	123659,123660
2go7A	207	49.30	c.108.1.6	135434
1o08A	221	49.66	c.108.1.6	86525
2fe7A	166	49.75	d.108.1.1	133325
1xfoA	357	50.58	b.49.3.1,c.56.5.4	115265,115266
1vhrA	184	51.40	c.45.1.1	32651
2dvmA	439	51.85		
1y0yA	353	52.12	b.49.3.1,c.56.5.4	122514,122515
5nulA	138	55.12	c.23.5.1	31191
2qlcA	126	55.80		
2c78A	405	57.27	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1mxgA	435	58.71	b.71.1.1,c.1.8.1	85193,85194
1opr	213	62.94		
2yzkA	178	63.60		
3bfxA	296	64.24		
2nygA	273	64.74		
1a8y	367	69.03		
2c2xA	281	71.68		
2hcmA	164	72.07		
2h1rA	299	72.95		
1x24A	180	75.37		
1zs9A	261	75.59	c.108.1.22	125600
1v04A	355	76.22	b.68.6.2	100240
1h3gA	601	76.38	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1ads	315	80.40		
1qe5A	266	80.52	c.56.2.1	33784
2hdoA	209	80.99	c.108.1.6	136345
1y0bA	197	82.15	c.61.1.1	122476
1vchA	175	82.81	c.61.1.1	119980
2esbA	188	83.33		
2cunA	410	84.91		
1zin	217	85.09		
1p15A	253	85.74	c.45.1.2	93894
3cnhA	200	85.76		
3cwvA	369	87.97		
3bxpA	277	88.97