# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	7.88e-15	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1whbA	157	1.31e-14	c.46.1.4	114639
1e0cA	271	7.00e-14	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	1.55e-13		
2oucA	142	2.19e-13		
1uarA	285	2.57e-13	c.46.1.2,c.46.1.2	107762,107763
2gwfA	157	2.81e-13	c.46.1.4	135802
1gmxA	108	3.98e-13	c.46.1.3	65355
1qb0A	211	4.79e-13	c.46.1.1	32699
2j6pA	152	6.57e-13		
1ymkA	175	7.66e-13	c.46.1.1	123699
1c25	161	1.22e-12		
1rhsA	296	1.48e-12	c.46.1.2,c.46.1.2	32703,32704
2a2kA	175	1.53e-12		
1t3kA	152	2.64e-12	c.46.1.1	106357
1rhs	296	3.22e-12		
2fsxA	148	3.96e-12		
1okgA	373	1.24e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	6.04e-10		
1wv9A	94	5.67e-09		
2b4pA	334	6.830		
2c3zA	222	8.715		
2c46A	241	9.481		
2f46A	156	9.549		
1f60A	458	10.07	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
2b4uA	335	11.82		
1su8A	636	11.90	e.26.1.2	98999
1d5rA	324	15.49	b.7.1.1,c.45.1.1	23181,32697
1ywfA	296	16.84	c.45.1.5	124144
1d2eA	397	17.25	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1qgoA	264	17.55	c.92.1.2	35596
1yz4A	160	18.35		
1yn9A	169	19.80		
2c78A	405	24.74	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
2j16A	182	26.44		
1lh0A	213	26.47	c.61.1.1	73896
1zclA	180	26.98		
1exmA	405	27.47	b.43.3.1,b.44.1.1,c.37.1.8	25696,25736,32131
2a5lA	200	27.72	c.23.5.8	126176
2fe7A	166	27.88	d.108.1.1	133325
2eo5A	419	30.01		
2dy0A	190	30.23		
2cftA	298	30.52		
1y0eA	223	31.53	c.1.2.5	116297
2ph5A	480	32.04		
1wrmA	165	33.35		
1mxgA	435	35.58	b.71.1.1,c.1.8.1	85193,85194
1oroA	213	36.12	c.61.1.1	34093
2i6jA	161	36.26		
1zsqA	528	36.97	b.55.1.8,c.45.1.3	125616,125617
1jnyA	435	37.16	b.43.3.1,b.44.1.1,c.37.1.8	66982,66983,66984
3b2yA	275	38.36		
2ps1A	226	38.44		
1fpzA	212	39.02	c.45.1.1	59976
1j7xA	302	40.04	c.14.1.2	66425
1v04A	355	43.73	b.68.6.2	100240
1vhrA	184	44.22	c.45.1.1	32651
1aipA	405	47.94	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2p1zA	180	48.88		
2dvmA	439	49.44		
2bzlA	325	50.49		
2esbA	188	51.22		
1npyA	271	52.34	c.2.1.7,c.58.1.5	85995,85996
5nulA	138	52.71	c.23.5.1	31191
1zckA	154	53.98		
2hxpA	155	56.49		
1pa1A	310	59.99	c.45.1.2	94404
1opr	213	61.67		
1y0yA	353	62.44	b.49.3.1,c.56.5.4	122514,122515
2oycA	306	68.58		
1qb7A	236	69.63	c.61.1.1	34087
1lw3A	657	70.25	b.55.1.8,c.45.1.3	91152,91153
2bijA	305	72.24		
2h1rA	299	73.09		
2qlcA	126	73.27		
1wchA	315	73.51	c.45.1.2	114508
2yzkA	178	73.70		
1xfoA	357	74.39	b.49.3.1,c.56.5.4	115265,115266
1zrnA	232	77.94	c.108.1.1	43323
2ht9A	146	79.22		
1p15A	253	80.17	c.45.1.2	93894
1x24A	180	82.02		
2gpjA	252	83.26		
2iw1A	374	83.32	c.87.1.8	137738
1yloA	348	84.49	b.49.3.1,c.56.5.4	123659,123660
1b5pA	385	85.24	c.67.1.1	90403
5nul	138	88.97