# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 1.56e-17 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1e0cA 271 6.20e-17 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 6.77e-16 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 6.81e-16 c.46.1.4 114639 2hhgA 139 7.16e-16 2oucA 142 8.29e-16 1gmxA 108 1.37e-15 c.46.1.3 65355 1rhsA 296 2.12e-15 c.46.1.2,c.46.1.2 32703,32704 1qb0A 211 2.97e-15 c.46.1.1 32699 2j6pA 152 3.09e-15 1rhs 296 4.08e-15 1ymkA 175 1.34e-14 c.46.1.1 123699 2gwfA 157 1.72e-14 c.46.1.4 135802 1c25 161 1.87e-14 1t3kA 152 2.65e-14 c.46.1.1 106357 2a2kA 175 2.83e-14 2fsxA 148 8.01e-14 1okgA 373 4.71e-13 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.48e-11 1wv9A 94 1.29e-10 2c3zA 222 2.541 2b4uA 335 2.700 1yn9A 169 3.201 1d2eA 397 4.372 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2f46A 156 4.613 2fe7A 166 5.114 d.108.1.1 133325 2b4pA 334 5.258 2ps1A 226 5.632 2c46A 241 6.538 1ywfA 296 6.905 c.45.1.5 124144 1oroA 213 8.830 c.61.1.1 34093 1qgoA 264 9.774 c.92.1.2 35596 1lh0A 213 9.806 c.61.1.1 73896 1f60A 458 9.838 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1yz4A 160 10.30 1npyA 271 11.11 c.2.1.7,c.58.1.5 85995,85996 2dy0A 190 11.79 2cftA 298 12.62 1tf5A 844 13.02 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1opr 213 13.46 1exmA 405 13.80 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2eo5A 419 14.26 2dvmA 439 14.30 2c78A 405 14.38 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2go7A 207 14.74 c.108.1.6 135434 1vhrA 184 14.80 c.45.1.1 32651 2yzkA 178 16.02 2imgA 151 16.27 3cwvA 369 16.78 1zclA 180 18.17 1hgxA 183 18.34 c.61.1.1 34027 1su8A 636 18.59 e.26.1.2 98999 1te2A 226 18.84 c.108.1.6 106792 1a8y 367 19.40 1zrnA 232 20.70 c.108.1.1 43323 2h1rA 299 22.05 2gagB 405 22.58 1y0eA 223 22.96 c.1.2.5 116297 2d2jA 329 23.47 c.1.9.3 131175 1zsqA 528 23.62 b.55.1.8,c.45.1.3 125616,125617 1x24A 180 26.07 2r0bA 154 26.10 1d5rA 324 26.29 b.7.1.1,c.45.1.1 23181,32697 2ho4A 259 26.66 3b5vA 248 26.75 2hlkA 255 26.76 1a53 247 27.61 2om6A 235 28.14 2d4wA 504 28.35 1oheA 348 29.77 c.45.1.1,c.45.1.1 87013,87014 2hdoA 209 30.08 c.108.1.6 136345 2i6jA 161 30.13 3cnhA 200 30.87 1igs 248 31.09 1qb7A 236 31.52 c.61.1.1 34087 2j16A 182 31.81 1jnyA 435 31.90 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1y0bA 197 32.33 c.61.1.1 122476 2gmwA 211 32.48 2c4nA 250 33.13 c.108.1.14 129837 2hi0A 240 36.20 2esbA 188 36.36 2c2xA 281 36.56 2e0tA 151 37.51 2no4A 240 38.42 1zzwA 149 39.38 1zckA 154 40.10 1aipA 405 40.79 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1fpzA 212 41.19 c.45.1.1 59976 2nygA 273 41.59 1vchA 175 41.66 c.61.1.1 119980 1x42A 232 41.68 c.108.1.1 121677 2aeeA 211 42.09 c.61.1.1 126620 2pibA 216 42.21 1v04A 355 42.24 b.68.6.2 100240 1o08A 221 42.40 c.108.1.6 86525 2nt2A 145 43.85 1jlnA 297 44.58 c.45.1.2 63172 1u24A 337 44.72 c.45.1.4 112968 2j9iA 421 45.97 5nulA 138 46.33 c.23.5.1 31191 2hcmA 164 47.63 2bijA 305 48.61 1wrmA 165 50.71 2vc7A 314 52.21 1qq5A 253 52.46 c.108.1.1 43327 1larA 575 53.82 c.45.1.2,c.45.1.2 32693,32694 2hoqA 241 54.70 1zs9A 261 54.81 c.108.1.22 125600 2p1zA 180 57.29 2jg2A 422 57.36 2p4dA 172 57.50 2vlbA 251 57.69 2v0hA 456 58.98 1o1yA 239 58.98 c.23.16.1 86554 1u7pA 164 59.38 c.108.1.17 113095 2fdrA 229 61.47 c.108.1.6 133319 2i33A 258 61.56 5nul 138 62.80 2pr7A 137 62.92 2iw1A 374 63.99 c.87.1.8 137738 2oycA 306 64.24 2hpvA 208 64.25 2cybA 323 65.27 2yxeA 215 65.43 1pa1A 310 65.77 c.45.1.2 94404 1i9sA 210 68.21 c.45.1.1 62099 2cc0A 195 68.47 c.6.2.3 130209 1ny1A 240 71.75 c.6.2.3 86395 1byrA 155 72.06 d.136.1.1 41450 1zjjA 263 72.17 1pwhA 327 73.01 c.79.1.1 95224 1y88A 199 73.15 a.60.4.3,c.52.1.30 116560,116561 3ca8A 266 73.94 2a5lA 200 74.32 c.23.5.8 126176 1rmwA 212 74.90 2bo1A 101 76.06 2hxpA 155 76.14 1wchA 315 76.48 c.45.1.2 114508 1ou8A 111 77.64 b.136.1.1 93543 1bu6O 501 78.01 c.55.1.4,c.55.1.4 33499,33500 1sdjA 310 80.02 d.21.1.2,d.21.1.2 98807,98808 2ph5A 480 81.31 1rxdA 159 81.38 c.45.1.1 111959 1xdzA 240 81.88 c.66.1.20 115196 3cg4A 142 83.66 2fymA 431 84.02 c.1.11.1,d.54.1.1 134379,134380 3b2yA 275 84.39 1yfnA 118 85.80 b.136.1.1 123080 1x31B 404 87.49 1p15A 253 87.84 c.45.1.2 93894 2c1iA 431 89.12 c.6.2.3,d.341.1.1 129636,129637 1zn8A 180 89.28 c.61.1.1 125376