# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 6.81e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 2.65e-15 c.46.1.4 114639 1e0cA 271 5.97e-15 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 7.90e-15 1qb0A 211 2.16e-14 c.46.1.1 32699 2oucA 142 3.59e-14 1uarA 285 3.81e-14 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 4.79e-14 c.46.1.3 65355 1ymkA 175 7.19e-14 c.46.1.1 123699 2gwfA 157 8.65e-14 c.46.1.4 135802 1c25 161 9.42e-14 2j6pA 152 1.34e-13 2a2kA 175 1.80e-13 2fsxA 148 2.53e-13 1t3kA 152 4.12e-13 c.46.1.1 106357 1rhs 296 4.24e-13 1rhsA 296 4.92e-13 c.46.1.2,c.46.1.2 32703,32704 1okgA 373 7.20e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 2.98e-10 1wv9A 94 2.12e-09 2b4uA 335 3.199 1d2eA 397 7.579 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2c78A 405 8.070 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2b4pA 334 8.171 2c46A 241 8.863 1d5rA 324 10.27 b.7.1.1,c.45.1.1 23181,32697 1qgoA 264 11.26 c.92.1.2 35596 1f60A 458 13.89 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2f46A 156 15.83 1yn9A 169 16.38 2c3zA 222 16.45 1ywfA 296 17.98 c.45.1.5 124144 1npyA 271 19.96 c.2.1.7,c.58.1.5 85995,85996 2dy0A 190 23.41 1yz4A 160 23.61 3b2yA 275 24.50 2cftA 298 25.66 2eo5A 419 27.06 1exmA 405 27.17 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2fe7A 166 29.78 d.108.1.1 133325 2j16A 182 34.14 1vhrA 184 34.90 c.45.1.1 32651 1wrmA 165 37.00 1zclA 180 37.32 2jg2A 422 37.71 2pt0A 340 38.97 1fpzA 212 40.17 c.45.1.1 59976 1su8A 636 43.48 e.26.1.2 98999 1oroA 213 46.00 c.61.1.1 34093 1qb7A 236 47.34 c.61.1.1 34087 2fh7A 595 48.11 1hgxA 183 49.18 c.61.1.1 34027 1lh0A 213 49.58 c.61.1.1 73896 2p1zA 180 49.86 1zavA 180 50.07 1zrnA 232 50.83 c.108.1.1 43323 2ps1A 226 51.19 1a8y 367 52.30 2dvmA 439 52.39 1zin 217 53.76 2ph5A 480 55.20 1zckA 154 55.67 2hi0A 240 56.75 2bijA 305 56.83 5nulA 138 58.55 c.23.5.1 31191 2d2jA 329 58.94 c.1.9.3 131175 1j7xA 302 59.50 c.14.1.2 66425 1jlnA 297 59.71 c.45.1.2 63172 2i6jA 161 60.02 1mxgA 435 60.24 b.71.1.1,c.1.8.1 85193,85194 1zsqA 528 60.79 b.55.1.8,c.45.1.3 125616,125617 1y0yA 353 61.00 b.49.3.1,c.56.5.4 122514,122515 2h1rA 299 61.38 1rxdA 159 62.00 c.45.1.1 111959 1i9sA 210 63.57 c.45.1.1 62099 2bzlA 325 64.84 2d4wA 504 64.86 2go7A 207 66.06 c.108.1.6 135434 2p6xA 309 67.51 1wchA 315 70.12 c.45.1.2 114508 1byrA 155 70.13 d.136.1.1 41450 1v04A 355 70.18 b.68.6.2 100240 2a5lA 200 71.19 c.23.5.8 126176 1xxpA 306 72.08 c.45.1.2 122423 2c2xA 281 74.33 3cssA 267 74.63 2hdoA 209 75.73 c.108.1.6 136345 1sur 215 76.49 2hhjA 267 76.50 c.60.1.1 136497 1aipA 405 76.72 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2no4A 240 78.18 1ytw 306 79.58 2h4vA 320 79.62 2qlcA 126 79.82 1opr 213 81.21 1p15A 253 81.45 c.45.1.2 93894 2flsA 132 81.80 2vc7A 314 84.02 2ywmA 229 84.13 1vchA 175 84.60 c.61.1.1 119980 1w25A 459 85.97 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3bfxA 296 88.40 1larA 575 89.66 c.45.1.2,c.45.1.2 32693,32694