# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 4.21e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 1.88e-14 c.46.1.4 114639 1e0cA 271 2.79e-14 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 3.37e-14 1qb0A 211 1.25e-13 c.46.1.1 32699 1uarA 285 1.61e-13 c.46.1.2,c.46.1.2 107762,107763 2oucA 142 1.93e-13 1gmxA 108 2.93e-13 c.46.1.3 65355 1ymkA 175 3.43e-13 c.46.1.1 123699 2gwfA 157 4.41e-13 c.46.1.4 135802 1c25 161 4.55e-13 2j6pA 152 5.63e-13 2a2kA 175 9.98e-13 2fsxA 148 1.48e-12 1rhsA 296 2.00e-12 c.46.1.2,c.46.1.2 32703,32704 1t3kA 152 2.23e-12 c.46.1.1 106357 1rhs 296 2.37e-12 1okgA 373 3.43e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.03e-09 1wv9A 94 7.21e-09 2b4uA 335 4.237 2b4pA 334 7.693 1d2eA 397 7.714 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2c46A 241 9.629 1qgoA 264 9.751 c.92.1.2 35596 1d5rA 324 12.05 b.7.1.1,c.45.1.1 23181,32697 2f46A 156 12.28 2c78A 405 13.00 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1ywfA 296 14.46 c.45.1.5 124144 1f60A 458 15.25 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1yn9A 169 17.71 1npyA 271 18.31 c.2.1.7,c.58.1.5 85995,85996 2dy0A 190 23.05 2cftA 298 24.57 3b2yA 275 24.63 2c3zA 222 25.38 1yz4A 160 26.83 1qb7A 236 31.11 c.61.1.1 34087 2j16A 182 31.55 1wrmA 165 34.82 2ps1A 226 35.79 1hgxA 183 36.20 c.61.1.1 34027 2pt0A 340 36.32 2eo5A 419 36.48 1zclA 180 36.66 1lh0A 213 37.32 c.61.1.1 73896 1fpzA 212 37.36 c.45.1.1 59976 1j7xA 302 37.76 c.14.1.2 66425 1oroA 213 38.52 c.61.1.1 34093 1vhrA 184 39.32 c.45.1.1 32651 1exmA 405 41.53 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2fe7A 166 41.87 d.108.1.1 133325 5nulA 138 42.09 c.23.5.1 31191 1zin 217 43.37 2fh7A 595 43.89 1vchA 175 46.61 c.61.1.1 119980 2i6jA 161 48.55 2bijA 305 49.62 1zrnA 232 50.02 c.108.1.1 43323 2jg2A 422 50.09 2p1zA 180 51.89 2go7A 207 53.79 c.108.1.6 135434 2ph5A 480 53.89 1y0bA 197 55.52 c.61.1.1 122476 2p6xA 309 55.76 2hi0A 240 56.20 1jlnA 297 56.26 c.45.1.2 63172 1su8A 636 57.17 e.26.1.2 98999 2hdoA 209 57.30 c.108.1.6 136345 1opr 213 57.56 2no4A 240 57.87 1rxdA 159 59.30 c.45.1.1 111959 2h4vA 320 61.14 1zckA 154 62.06 3bfxA 296 64.07 2cybA 323 64.25 1a8y 367 64.26 2dvmA 439 64.53 3c3kA 285 65.47 2bzlA 325 65.92 1zsqA 528 66.52 b.55.1.8,c.45.1.3 125616,125617 2h1rA 299 67.13 1wchA 315 67.43 c.45.1.2 114508 2d4wA 504 68.14 1w25A 459 69.08 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 1i9sA 210 69.15 c.45.1.1 62099 1mxgA 435 72.47 b.71.1.1,c.1.8.1 85193,85194 2gpjA 252 72.64 1sur 215 72.70 2flsA 132 73.15 2hhjA 267 73.33 c.60.1.1 136497 2yzkA 178 75.98 2d2jA 329 76.13 c.1.9.3 131175 1p15A 253 76.71 c.45.1.2 93894 2a5lA 200 76.97 c.23.5.8 126176 2b49A 287 78.25 1larA 575 78.26 c.45.1.2,c.45.1.2 32693,32694 2qlcA 126 78.50 1y0yA 353 79.28 b.49.3.1,c.56.5.4 122514,122515 1byrA 155 79.79 d.136.1.1 41450 2cunA 410 80.24 1jnyA 435 83.23 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1pwhA 327 85.36 c.79.1.1 95224 1x42A 232 86.85 c.108.1.1 121677 2hcmA 164 86.92 1ep3A 311 88.88 c.1.4.1 28597 2hxpA 155 88.89 2yv1A 294 89.14 2oycA 306 89.51