# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 1.00e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 3.55e-14 c.46.1.4 114639 1e0cA 271 5.97e-14 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 7.39e-14 2oucA 142 2.41e-13 1uarA 285 2.45e-13 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 2.52e-13 c.46.1.1 32699 1ymkA 175 5.92e-13 c.46.1.1 123699 1gmxA 108 6.14e-13 c.46.1.3 65355 2gwfA 157 6.73e-13 c.46.1.4 135802 2j6pA 152 7.37e-13 1c25 161 8.70e-13 2a2kA 175 1.67e-12 2fsxA 148 2.37e-12 1rhsA 296 3.23e-12 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.38e-12 1t3kA 152 3.45e-12 c.46.1.1 106357 1okgA 373 3.38e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.55e-09 1wv9A 94 9.22e-09 2b4uA 335 3.213 2b4pA 334 7.050 1d5rA 324 7.913 b.7.1.1,c.45.1.1 23181,32697 2c46A 241 9.397 1d2eA 397 11.22 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2f46A 156 11.37 1qgoA 264 11.62 c.92.1.2 35596 1f60A 458 12.71 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ywfA 296 15.48 c.45.1.5 124144 1yn9A 169 16.11 2c3zA 222 17.74 1yz4A 160 19.68 1npyA 271 21.58 c.2.1.7,c.58.1.5 85995,85996 2dy0A 190 22.30 2cftA 298 24.19 3b2yA 275 26.72 2c78A 405 26.92 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1wrmA 165 27.18 1zclA 180 28.18 1vhrA 184 29.90 c.45.1.1 32651 1zin 217 31.92 5nulA 138 32.07 c.23.5.1 31191 1fpzA 212 32.61 c.45.1.1 59976 1j7xA 302 32.78 c.14.1.2 66425 2pt0A 340 33.63 1jnyA 435 37.27 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1lh0A 213 37.67 c.61.1.1 73896 3bfxA 296 38.15 1oroA 213 38.26 c.61.1.1 34093 2eo5A 419 38.37 1qb7A 236 39.17 c.61.1.1 34087 2j16A 182 39.97 1hgxA 183 41.65 c.61.1.1 34027 2fh7A 595 42.00 2p1zA 180 42.94 1exmA 405 42.98 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1zrnA 232 44.01 c.108.1.1 43323 2hi0A 240 44.39 2bijA 305 44.83 2i6jA 161 44.93 2fe7A 166 45.84 d.108.1.1 133325 2h4vA 320 48.72 1wchA 315 50.47 c.45.1.2 114508 2cunA 410 53.04 1jlnA 297 53.81 c.45.1.2 63172 2go7A 207 53.87 c.108.1.6 135434 3c3kA 285 54.27 1mxgA 435 56.53 b.71.1.1,c.1.8.1 85193,85194 2dvmA 439 56.75 2d2jA 329 56.81 c.1.9.3 131175 2jg2A 422 57.11 2no4A 240 58.07 2p6xA 309 58.81 2ph5A 480 59.93 1zsqA 528 60.31 b.55.1.8,c.45.1.3 125616,125617 1larA 575 60.43 c.45.1.2,c.45.1.2 32693,32694 1w25A 459 62.06 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2ps1A 226 62.30 1p15A 253 62.81 c.45.1.2 93894 1i9sA 210 62.86 c.45.1.1 62099 2gpjA 252 62.92 1vchA 175 63.24 c.61.1.1 119980 1zckA 154 64.38 1y0eA 223 64.56 c.1.2.5 116297 2bzlA 325 65.58 2hdoA 209 65.81 c.108.1.6 136345 2b49A 287 66.01 1sur 215 66.23 1y0yA 353 67.02 b.49.3.1,c.56.5.4 122514,122515 1byrA 155 68.08 d.136.1.1 41450 1su8A 636 68.58 e.26.1.2 98999 1x42A 232 68.92 c.108.1.1 121677 1opr 213 69.14 5nul 138 70.11 1rxdA 159 70.20 c.45.1.1 111959 2hcmA 164 70.27 2esbA 188 72.00 2oycA 306 73.82 1zzwA 149 75.31 2qlcA 126 75.33 1fc6A 388 75.36 b.36.1.3,c.14.1.2 64738,64739 1y0bA 197 75.85 c.61.1.1 122476 2oq2A 261 78.57 2j5bA 348 78.92 2hxpA 155 79.81 2cybA 323 80.57 1qw9A 502 80.92 b.71.1.2,c.1.8.3 96466,96467 1vk2A 204 81.13 c.18.1.2 100845 2flsA 132 81.41 1ep3A 311 81.43 c.1.4.1 28597 2d4wA 504 83.08 2h1rA 299 84.91 1ytw 306 87.64 1v04A 355 89.38 b.68.6.2 100240