# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	1.58e-14	c.46.1.4	114639
2hhgA	139	1.73e-14		
1yt8A	539	2.47e-14	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	2.56e-14		
1e0cA	271	4.12e-14	c.46.1.2,c.46.1.2	32717,32718
2oucA	142	6.16e-14		
1qb0A	211	2.14e-13	c.46.1.1	32699
2gwfA	157	2.25e-13	c.46.1.4	135802
1gmxA	108	2.27e-13	c.46.1.3	65355
1uarA	285	2.55e-13	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	6.72e-13	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	1.20e-12	c.46.1.1	123699
1c25	161	1.50e-12		
2a2kA	175	2.62e-12		
1t3kA	152	2.95e-12	c.46.1.1	106357
2fsxA	148	3.24e-12		
1rhs	296	5.44e-12		
1okgA	373	4.95e-11	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.42e-09		
1wv9A	94	9.83e-09		
2c3zA	222	1.899		
1yn9A	169	2.149		
2b4uA	335	3.596		
2b4pA	334	8.176		
2c46A	241	8.493		
1zclA	180	9.723		
1vhrA	184	10.31	c.45.1.1	32651
2f46A	156	13.32		
1d5rA	324	14.40	b.7.1.1,c.45.1.1	23181,32697
1npyA	271	18.98	c.2.1.7,c.58.1.5	85995,85996
2imgA	151	21.31		
1yz4A	160	23.73		
1x24A	180	24.70		
1zzwA	149	25.25		
2d2jA	329	25.49	c.1.9.3	131175
2r0bA	154	26.37		
2iw0A	254	27.62	c.6.2.3	137737
2cftA	298	27.65		
1i9sA	210	28.18	c.45.1.1	62099
1fpzA	212	28.71	c.45.1.1	59976
2hlkA	255	30.23		
1jlnA	297	31.66	c.45.1.2	63172
1zckA	154	37.47		
2i6jA	161	39.29		
2oycA	306	40.51		
2c1iA	431	42.45	c.6.2.3,d.341.1.1	129636,129637
2hi0A	240	43.37		
2nt2A	145	43.43		
2j16A	182	43.54		
2eo5A	419	44.45		
2hxpA	155	46.68		
2gupA	292	49.03	c.55.1.10,c.55.1.10	135744,135745
2fh7A	595	49.05		
1qb7A	236	52.26	c.61.1.1	34087
1larA	575	52.91	c.45.1.2,c.45.1.2	32693,32694
1zrnA	232	56.37	c.108.1.1	43323
2p4dA	172	56.57		
2dy0A	190	60.56		
2go7A	207	61.02	c.108.1.6	135434
3bwuD	125	61.77		
2vc7A	314	63.24		
1f60A	458	63.28	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1pa7A	130	64.99	a.40.1.1	94410
1o57A	291	65.68	a.4.5.40,c.61.1.1	92483,92484
2esbA	188	68.62		
1oheA	348	68.82	c.45.1.1,c.45.1.1	87013,87014
1qd1A	325	69.19	d.58.34.1,d.58.34.1	39493,39494
1rxdA	159	69.55	c.45.1.1	111959
1oroA	213	72.77	c.61.1.1	34093
1d2eA	397	72.91	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2pt0A	340	76.02		
1i9gA	280	76.23	c.66.1.13	62090
1a4mA	349	77.15	c.1.9.1	29014
2ph5A	480	77.61		
2c78A	405	78.29	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
2himA	358	80.05		
1y0bA	197	80.25	c.61.1.1	122476
1aipA	405	82.04	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2ht9A	146	83.55		
3cnhA	200	85.50		
2c1gA	431	87.29	c.6.2.3,d.341.1.1	129632,129633
2c2xA	281	88.83		
1wrmA	165	89.10