# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 4.08e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1e0cA 271 2.15e-14 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 3.08e-14 c.46.1.4 114639 2oucA 142 1.03e-13 2hhgA 139 1.59e-13 2j6pA 152 1.78e-13 1rhsA 296 2.09e-13 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 2.27e-13 c.46.1.3 65355 1uarA 285 2.70e-13 c.46.1.2,c.46.1.2 107762,107763 2gwfA 157 2.72e-13 c.46.1.4 135802 1qb0A 211 5.16e-13 c.46.1.1 32699 1c25 161 7.79e-13 1ymkA 175 8.10e-13 c.46.1.1 123699 1rhs 296 1.34e-12 2a2kA 175 1.34e-12 1t3kA 152 1.62e-12 c.46.1.1 106357 2fsxA 148 2.53e-12 1okgA 373 3.25e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 6.47e-10 1wv9A 94 6.57e-09 1yn9A 169 5.277 2b4pA 334 6.828 2c3zA 222 6.991 1yz4A 160 7.846 1vhrA 184 7.899 c.45.1.1 32651 1d5rA 324 8.007 b.7.1.1,c.45.1.1 23181,32697 2f46A 156 8.589 1f60A 458 10.00 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2c78A 405 10.53 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1su8A 636 13.95 e.26.1.2 98999 2b4uA 335 15.06 1x24A 180 15.61 2hxpA 155 16.69 2fe7A 166 16.81 d.108.1.1 133325 2r0bA 154 17.12 1wrmA 165 18.67 2j16A 182 18.71 1d2eA 397 18.75 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2c46A 241 18.92 1zclA 180 19.69 3cwvA 369 20.79 2i6jA 161 26.37 1fpzA 212 28.47 c.45.1.1 59976 2d2jA 329 29.49 c.1.9.3 131175 1npyA 271 29.79 c.2.1.7,c.58.1.5 85995,85996 2p4dA 172 30.06 2p1zA 180 30.58 1qgoA 264 31.54 c.92.1.2 35596 2esbA 188 31.89 2dy0A 190 32.20 1v04A 355 32.72 b.68.6.2 100240 1zzwA 149 33.73 2hlkA 255 34.95 2cftA 298 35.53 1y0eA 223 35.67 c.1.2.5 116297 2jg2A 422 36.85 2nt2A 145 37.02 2go7A 207 38.09 c.108.1.6 135434 2hcmA 164 38.46 1exmA 405 41.79 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2e0tA 151 42.28 2imgA 151 43.12 2dvmA 439 43.40 1lh0A 213 43.63 c.61.1.1 73896 1qb7A 236 44.67 c.61.1.1 34087 1ywfA 296 45.01 c.45.1.5 124144 1zsqA 528 45.67 b.55.1.8,c.45.1.3 125616,125617 2i33A 258 45.92 5nulA 138 47.70 c.23.5.1 31191 1zckA 154 48.16 2eo5A 419 48.54 1jnyA 435 48.88 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1aipA 405 48.88 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2yzkA 178 49.81 2ps1A 226 51.06 1zrnA 232 53.14 c.108.1.1 43323 1mxgA 435 54.27 b.71.1.1,c.1.8.1 85193,85194 1oheA 348 54.78 c.45.1.1,c.45.1.1 87013,87014 2vc7A 314 55.38 2v0hA 456 56.38 1oroA 213 60.25 c.61.1.1 34093 3b2yA 275 64.16 2ywmA 229 64.50 1wzzA 334 64.78 a.102.1.2 121536 1n2zA 245 68.17 c.92.2.2 79865 2gf3A 389 69.41 c.3.1.2,d.16.1.3 135070,135071 2bijA 305 70.34 3ca8A 266 72.51 5nul 138 73.32 2ph5A 480 73.80 1p15A 253 74.19 c.45.1.2 93894 1dl5A 317 74.31 c.66.1.7,d.197.1.1 64720,64721 1o1yA 239 75.42 c.23.16.1 86554 2cybA 323 76.15 1j96A 323 76.76 c.1.7.1 71616 1u24A 337 77.28 c.45.1.4 112968 3cnhA 200 82.94 3d2lA 243 82.96 1ny1A 240 83.16 c.6.2.3 86395 2hhjA 267 83.93 c.60.1.1 136497 1h3gA 601 84.82 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1y0bA 197 85.73 c.61.1.1 122476 1larA 575 86.42 c.45.1.2,c.45.1.2 32693,32694 1y0yA 353 88.31 b.49.3.1,c.56.5.4 122514,122515 1zn8A 180 88.55 c.61.1.1 125376 2om6A 235 88.85