# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 1.82e-17 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 1.05e-16 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 1.87e-16 c.46.1.4 114639 2oucA 142 2.46e-16 2hhgA 139 7.40e-16 1gmxA 108 1.00e-15 c.46.1.3 65355 2j6pA 152 1.47e-15 2gwfA 157 2.17e-15 c.46.1.4 135802 1e0cA 271 2.21e-15 c.46.1.2,c.46.1.2 32717,32718 1qb0A 211 3.06e-15 c.46.1.1 32699 1c25 161 7.74e-15 1rhsA 296 7.75e-15 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 7.99e-15 c.46.1.1 123699 1rhs 296 1.09e-14 1t3kA 152 2.02e-14 c.46.1.1 106357 2fsxA 148 7.02e-14 2a2kA 175 7.37e-14 1okgA 373 1.38e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 2.30e-11 1wv9A 94 4.63e-10 2c3zA 222 2.929 2p1zA 180 2.976 1yz4A 160 3.664 1yn9A 169 4.121 1vhrA 184 4.550 c.45.1.1 32651 2hhjA 267 4.757 c.60.1.1 136497 2p4dA 172 4.882 1jnyA 435 5.171 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1y0yA 353 5.874 b.49.3.1,c.56.5.4 122514,122515 2dy0A 190 6.293 1mxgA 435 6.554 b.71.1.1,c.1.8.1 85193,85194 2ps1A 226 8.144 2f46A 156 9.485 2c46A 241 9.819 1lw3A 657 11.32 b.55.1.8,c.45.1.3 91152,91153 1rvgA 305 11.56 c.1.10.2 97920 1d2eA 397 12.46 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1rxdA 159 14.06 c.45.1.1 111959 2hxpA 155 14.83 1wrmA 165 14.90 1tf5A 844 14.94 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1x24A 180 15.88 2j16A 182 15.99 1t0bA 252 16.05 c.23.16.6 106199 2go7A 207 16.97 c.108.1.6 135434 2r0bA 154 17.02 1qusA 322 17.15 d.2.1.6 36991 2c78A 405 17.34 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1vk2A 204 21.21 c.18.1.2 100845 2eo5A 419 21.43 1zodA 433 22.65 c.67.1.4 125437 1ep3A 311 23.40 c.1.4.1 28597 2pgeA 377 23.57 1d5rA 324 23.88 b.7.1.1,c.45.1.1 23181,32697 1lh0A 213 24.25 c.61.1.1 73896 2i6jA 161 24.41 2cftA 298 25.06 2hpvA 208 25.69 3b2yA 275 27.00 2fe7A 166 27.37 d.108.1.1 133325 2bodX 286 28.12 c.6.1.1 128909 1exmA 405 28.54 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1qhfA 240 28.67 c.60.1.1 33960 1zzwA 149 29.68 1zsqA 528 31.24 b.55.1.8,c.45.1.3 125616,125617 2oycA 306 31.31 5nulA 138 31.84 c.23.5.1 31191 1yobA 179 31.85 c.23.5.1 123776 2af4C 333 32.77 c.77.1.5 126656 2qgqA 304 33.11 2imgA 151 33.28 2yzkA 178 33.55 2e0tA 151 35.85 1zin 217 36.25 1idkA 359 37.74 b.80.1.2 28025 1n2zA 245 37.90 c.92.2.2 79865 1zclA 180 38.79 3bfxA 296 38.82 2hcmA 164 39.46 1u24A 337 39.53 c.45.1.4 112968 2nt2A 145 39.63 1qb7A 236 39.72 c.61.1.1 34087 2cxaA 256 39.86 d.108.1.6 130993 2b4pA 334 40.07 2a5lA 200 40.24 c.23.5.8 126176 2fh7A 595 40.60 1hv9A 456 40.94 b.81.1.4,c.68.1.5 28060,34518 2v0hA 456 42.16 1byrA 155 42.74 d.136.1.1 41450 5nul 138 44.16 2bijA 305 44.38 1gsjA 258 44.77 c.73.1.2 70397 2gjlA 328 44.85 1zckA 154 46.35 1vr0A 247 46.74 c.148.1.1 120428 1fpzA 212 49.17 c.45.1.1 59976 2cunA 410 50.64 2hldD 478 52.00 2ez9A 603 52.43 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1u6eA 335 53.16 c.95.1.2,c.95.1.2 119568,119569 2eplX 627 54.37 1xfoA 357 54.83 b.49.3.1,c.56.5.4 115265,115266 2yv1A 294 55.16 2f48A 555 55.76 c.89.1.1 132915 1v2dA 381 56.67 c.67.1.1 108281 1qf9A 194 56.99 c.37.1.1 31848 1pa1A 310 57.67 c.45.1.2 94404 1sur 215 58.09 2ipxA 233 58.92 1vchA 175 58.95 c.61.1.1 119980 2oq2A 261 59.43 1o6dA 163 59.48 c.116.1.3 92567 1gq6A 313 59.93 c.42.1.1 70341 2fr5A 146 59.94 c.97.1.1 133965 1n4aA 252 60.30 c.92.2.2 85317 2vc7A 314 60.82 2nxfA 322 61.15 2ph5A 480 63.24 1hwxA 501 63.72 c.2.1.7,c.58.1.1 30250,33898 1i9sA 210 64.36 c.45.1.1 62099 1p15A 253 65.14 c.45.1.2 93894 1wohA 305 65.50 c.42.1.1 109446 2jgyA 279 66.03 2pt0A 340 66.39 1y0bA 197 67.13 c.61.1.1 122476 1jlnA 297 67.98 c.45.1.2 63172 1lurA 339 68.61 b.30.5.4 84717 1hgxA 183 69.02 c.61.1.1 34027 2c4nA 250 69.63 c.108.1.14 129837 2ht9A 146 70.15 3b5vA 248 71.19 3bf0A 593 71.31 2g09A 297 72.11 1g2qA 187 72.75 c.61.1.1 65117 1yfnA 118 73.38 b.136.1.1 123080 2bo1A 101 73.86 1qw9A 502 73.93 b.71.1.2,c.1.8.3 96466,96467 2b49A 287 74.03 2d4wA 504 76.09 1s1pA 331 76.64 c.1.7.1 98350 1zn8A 180 76.78 c.61.1.1 125376 1te2A 226 77.91 c.108.1.6 106792 2hi0A 240 78.17 1atg 231 78.26 2bogX 286 79.82 1bgpA 309 80.68 a.93.1.1 18690 1h1nA 305 81.16 c.1.8.3 70855 1t5bA 201 81.65 c.23.5.3 106433 2hdoA 209 82.19 c.108.1.6 136345 3bxpA 277 82.94 2hxvA 360 83.27 c.71.1.2,c.97.1.2 136859,136860 3d2lA 243 86.37 2hy7A 406 86.58 1o1yA 239 87.02 c.23.16.1 86554 1v6sA 390 87.18 c.86.1.1 100424 1xxpA 306 88.86 c.45.1.2 122423