# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 2.00e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 8.46e-14 c.46.1.4 114639 1e0cA 271 1.33e-13 c.46.1.2,c.46.1.2 32717,32718 2oucA 142 3.87e-13 2hhgA 139 5.33e-13 2gwfA 157 8.16e-13 c.46.1.4 135802 1gmxA 108 8.44e-13 c.46.1.3 65355 2j6pA 152 8.65e-13 1uarA 285 8.94e-13 c.46.1.2,c.46.1.2 107762,107763 1rhsA 296 1.04e-12 c.46.1.2,c.46.1.2 32703,32704 1qb0A 211 2.08e-12 c.46.1.1 32699 1c25 161 2.14e-12 1ymkA 175 2.51e-12 c.46.1.1 123699 1t3kA 152 3.78e-12 c.46.1.1 106357 2a2kA 175 4.65e-12 1rhs 296 4.85e-12 2fsxA 148 8.35e-12 1okgA 373 1.77e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.57e-09 1wv9A 94 1.62e-08 2b4pA 334 3.848 2c3zA 222 4.597 1yn9A 169 5.082 1f60A 458 5.653 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1d5rA 324 6.673 b.7.1.1,c.45.1.1 23181,32697 2f46A 156 7.416 1yz4A 160 7.568 1vhrA 184 8.906 c.45.1.1 32651 1su8A 636 10.90 e.26.1.2 98999 2c78A 405 11.68 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2c46A 241 11.96 2b4uA 335 12.70 1d2eA 397 13.00 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2hxpA 155 13.25 1zclA 180 13.96 1wrmA 165 15.42 1x24A 180 15.48 2j16A 182 16.21 1jnyA 435 17.49 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1qgoA 264 18.95 c.92.1.2 35596 1exmA 405 18.99 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2i6jA 161 21.73 1zsqA 528 22.04 b.55.1.8,c.45.1.3 125616,125617 1fpzA 212 25.35 c.45.1.1 59976 2esbA 188 25.93 2r0bA 154 25.95 2p4dA 172 27.72 1zzwA 149 27.84 2p1zA 180 28.14 2hcmA 164 29.29 2jg2A 422 30.73 1ywfA 296 31.55 c.45.1.5 124144 5nulA 138 31.80 c.23.5.1 31191 1y0eA 223 32.79 c.1.2.5 116297 3cwvA 369 33.56 3b2yA 275 33.99 2fe7A 166 34.69 d.108.1.1 133325 2go7A 207 35.38 c.108.1.6 135434 1mxgA 435 35.56 b.71.1.1,c.1.8.1 85193,85194 1zckA 154 35.67 2ph5A 480 36.09 2hlkA 255 36.36 2bzlA 325 38.76 2dvmA 439 39.56 2imgA 151 40.37 2eo5A 419 42.28 2nt2A 145 42.62 1aipA 405 44.03 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1p15A 253 45.47 c.45.1.2 93894 2dy0A 190 47.10 2bijA 305 48.24 1zrnA 232 48.72 c.108.1.1 43323 1lh0A 213 48.82 c.61.1.1 73896 2yzkA 178 49.79 1y0yA 353 50.65 b.49.3.1,c.56.5.4 122514,122515 1v04A 355 50.83 b.68.6.2 100240 1npyA 271 51.16 c.2.1.7,c.58.1.5 85995,85996 2d2jA 329 53.11 c.1.9.3 131175 2cftA 298 53.16 3ca8A 266 53.81 3bfxA 296 57.76 2e0tA 151 58.59 1qw9A 502 59.27 b.71.1.2,c.1.8.3 96466,96467 5nul 138 59.71 1jlnA 297 61.40 c.45.1.2 63172 1pa1A 310 61.61 c.45.1.2 94404 1h3gA 601 61.64 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2hhjA 267 63.83 c.60.1.1 136497 2a5lA 200 64.76 c.23.5.8 126176 2ywmA 229 64.82 2gf3A 389 65.18 c.3.1.2,d.16.1.3 135070,135071 1u24A 337 65.27 c.45.1.4 112968 1oheA 348 66.06 c.45.1.1,c.45.1.1 87013,87014 1yobA 179 67.67 c.23.5.1 123776 1n2zA 245 72.47 c.92.2.2 79865 2hdoA 209 72.60 c.108.1.6 136345 1qb7A 236 72.70 c.61.1.1 34087 2ps1A 226 72.80 1o1yA 239 73.35 c.23.16.1 86554 1oroA 213 74.39 c.61.1.1 34093 2i33A 258 75.97 1larA 575 76.23 c.45.1.2,c.45.1.2 32693,32694 1lw3A 657 77.10 b.55.1.8,c.45.1.3 91152,91153 3cnhA 200 78.39 1wchA 315 79.28 c.45.1.2 114508 1xfoA 357 79.69 b.49.3.1,c.56.5.4 115265,115266 1byrA 155 80.58 d.136.1.1 41450 3b5vA 248 81.04 1sur 215 84.85 2hi0A 240 87.12 2ht9A 146 87.42 2oq2A 261 87.60