# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	3.00e-17	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1whbA	157	3.28e-17	c.46.1.4	114639
1e0cA	271	4.31e-16	c.46.1.2,c.46.1.2	32717,32718
2oucA	142	5.76e-16		
2hhgA	139	9.83e-16		
2gwfA	157	1.47e-15	c.46.1.4	135802
1gmxA	108	2.61e-15	c.46.1.3	65355
1qb0A	211	2.79e-15	c.46.1.1	32699
2j6pA	152	2.80e-15		
1t3kA	152	3.97e-15	c.46.1.1	106357
1ymkA	175	5.65e-15	c.46.1.1	123699
1c25	161	6.22e-15		
1uarA	285	6.36e-15	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	1.25e-14	c.46.1.2,c.46.1.2	32703,32704
2a2kA	175	1.28e-14		
2fsxA	148	3.04e-14		
1rhs	296	1.31e-13		
1okgA	373	1.72e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	4.02e-11		
1wv9A	94	1.77e-10		
2b4pA	334	5.663		
2b4uA	335	6.218		
2fe7A	166	8.403	d.108.1.1	133325
1d5rA	324	8.459	b.7.1.1,c.45.1.1	23181,32697
2c46A	241	8.490		
2f46A	156	9.126		
1f60A	458	9.365	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
2c3zA	222	12.16		
1d2eA	397	12.64	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2eo5A	419	13.93		
2c78A	405	15.38	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1yn9A	169	16.38		
2dy0A	190	19.01		
1yz4A	160	20.26		
1ywfA	296	22.47	c.45.1.5	124144
1qgoA	264	24.00	c.92.1.2	35596
1fpzA	212	26.36	c.45.1.1	59976
1vhrA	184	28.85	c.45.1.1	32651
1zclA	180	31.50		
2i6jA	161	35.15		
1exmA	405	36.30	b.43.3.1,b.44.1.1,c.37.1.8	25696,25736,32131
2p1zA	180	36.37		
2hhjA	267	36.52	c.60.1.1	136497
1wrmA	165	36.53		
1su8A	636	37.51	e.26.1.2	98999
1ynfA	458	38.04	d.126.1.7	123723
1aipA	405	39.53	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
3b2yA	275	40.65		
2ps1A	226	40.91		
1lh0A	213	41.97	c.61.1.1	73896
2j16A	182	42.70		
2a5lA	200	45.98	c.23.5.8	126176
2cftA	298	45.98		
1y0yA	353	46.12	b.49.3.1,c.56.5.4	122514,122515
1kpgA	287	47.29	c.66.1.18	68735
5nulA	138	48.57	c.23.5.1	31191
1oroA	213	50.77	c.61.1.1	34093
3bfxA	296	54.07		
2ph5A	480	57.00		
1u1zA	168	60.73	d.38.1.6	107602
1mxgA	435	60.97	b.71.1.1,c.1.8.1	85193,85194
2c29D	337	61.00		
1p15A	253	61.62	c.45.1.2	93894
2bzlA	325	62.10		
2bijA	305	63.75		
1zckA	154	64.04		
1yloA	348	64.08	b.49.3.1,c.56.5.4	123659,123660
1zrnA	232	66.21	c.108.1.1	43323
1j7xA	302	66.24	c.14.1.2	66425
1jnyA	435	66.44	b.43.3.1,b.44.1.1,c.37.1.8	66982,66983,66984
1xfoA	357	66.74	b.49.3.1,c.56.5.4	115265,115266
1efm	393	70.48		
2dvmA	439	73.02		
2go7A	207	75.13	c.108.1.6	135434
1zsqA	528	78.65	b.55.1.8,c.45.1.3	125616,125617
1v04A	355	80.87	b.68.6.2	100240
1wchA	315	80.99	c.45.1.2	114508
1opr	213	82.12		
5nul	138	83.51		
2yzkA	178	85.94		
2ywmA	229	86.90		
3d2lA	243	88.43		
1rzfH	235	89.39	b.1.1.1,b.1.1.2	98150,98151
2bklA	695	89.46