# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 3.69e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 8.88e-16 c.46.1.4 114639 1e0cA 271 3.78e-15 c.46.1.2,c.46.1.2 32717,32718 2oucA 142 5.58e-15 2hhgA 139 7.39e-15 1gmxA 108 2.28e-14 c.46.1.3 65355 2j6pA 152 2.39e-14 1qb0A 211 2.61e-14 c.46.1.1 32699 2gwfA 157 3.48e-14 c.46.1.4 135802 1uarA 285 3.91e-14 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 4.63e-14 c.46.1.1 123699 1rhsA 296 5.04e-14 c.46.1.2,c.46.1.2 32703,32704 1t3kA 152 7.06e-14 c.46.1.1 106357 1c25 161 7.91e-14 2a2kA 175 9.63e-14 2fsxA 148 2.07e-13 1rhs 296 4.88e-13 1okgA 373 8.31e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.79e-10 1wv9A 94 9.31e-10 2b4uA 335 3.777 2b4pA 334 3.883 2c46A 241 4.596 1yn9A 169 7.679 2f46A 156 7.996 1f60A 458 8.587 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2fe7A 166 8.666 d.108.1.1 133325 2c3zA 222 9.060 1d5rA 324 9.797 b.7.1.1,c.45.1.1 23181,32697 1yz4A 160 11.24 1qgoA 264 11.91 c.92.1.2 35596 1ywfA 296 14.80 c.45.1.5 124144 2eo5A 419 16.15 1zclA 180 17.55 1d2eA 397 18.45 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2dy0A 190 18.59 1vhrA 184 22.83 c.45.1.1 32651 2c78A 405 23.97 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1wrmA 165 24.39 2j16A 182 24.57 1fpzA 212 24.83 c.45.1.1 59976 2i6jA 161 24.88 2imgA 151 25.44 2ps1A 226 29.53 2esbA 188 31.36 1su8A 636 31.73 e.26.1.2 98999 5nulA 138 31.93 c.23.5.1 31191 1exmA 405 33.33 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1zzwA 149 33.94 2cftA 298 36.44 2bzlA 325 37.70 1jnyA 435 39.50 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1zckA 154 43.22 1jlnA 297 43.31 c.45.1.2 63172 1lh0A 213 44.11 c.61.1.1 73896 3bfxA 296 44.22 1p15A 253 44.30 c.45.1.2 93894 2yzkA 178 44.97 3b2yA 275 45.20 2bijA 305 45.25 2hxpA 155 45.48 1ynfA 458 45.82 d.126.1.7 123723 3cwvA 369 45.96 1x24A 180 46.49 1oroA 213 47.09 c.61.1.1 34093 1o1yA 239 47.40 c.23.16.1 86554 1larA 575 47.80 c.45.1.2,c.45.1.2 32693,32694 1zsqA 528 48.88 b.55.1.8,c.45.1.3 125616,125617 2ph5A 480 50.15 1y0yA 353 50.42 b.49.3.1,c.56.5.4 122514,122515 2hcmA 164 52.10 2dvmA 439 53.06 2a5lA 200 53.30 c.23.5.8 126176 2hhjA 267 53.68 c.60.1.1 136497 1zrnA 232 53.97 c.108.1.1 43323 1v04A 355 55.08 b.68.6.2 100240 1npyA 271 56.81 c.2.1.7,c.58.1.5 85995,85996 2go7A 207 57.57 c.108.1.6 135434 1i9sA 210 57.98 c.45.1.1 62099 1wchA 315 62.22 c.45.1.2 114508 1vchA 175 64.80 c.61.1.1 119980 2d2jA 329 65.14 c.1.9.3 131175 5nul 138 68.35 1y0eA 223 70.08 c.1.2.5 116297 2p1zA 180 70.51 2iw0A 254 73.47 c.6.2.3 137737 2om6A 235 74.13 1qb7A 236 74.19 c.61.1.1 34087 2ywmA 229 76.56 2c2xA 281 76.72 1opr 213 76.92 2oycA 306 78.60 1xfoA 357 79.71 b.49.3.1,c.56.5.4 115265,115266 1mxgA 435 80.31 b.71.1.1,c.1.8.1 85193,85194 1whtB 153 83.17 1byrA 155 83.63 d.136.1.1 41450 1pa1A 310 84.02 c.45.1.2 94404 2c29D 337 85.49 2no4A 240 86.14 1yloA 348 87.74 b.49.3.1,c.56.5.4 123659,123660 1zyeA 220 89.10 c.47.1.10 125817