# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 4.16e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 1.45e-15 c.46.1.4 114639 1e0cA 271 3.27e-15 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 1.04e-14 2oucA 142 1.08e-14 1uarA 285 2.55e-14 c.46.1.2,c.46.1.2 107762,107763 2gwfA 157 2.75e-14 c.46.1.4 135802 1gmxA 108 3.31e-14 c.46.1.3 65355 1qb0A 211 5.06e-14 c.46.1.1 32699 2j6pA 152 7.51e-14 1ymkA 175 9.16e-14 c.46.1.1 123699 1c25 161 1.14e-13 1rhsA 296 1.45e-13 c.46.1.2,c.46.1.2 32703,32704 2a2kA 175 1.87e-13 1t3kA 152 1.94e-13 c.46.1.1 106357 2fsxA 148 3.30e-13 1rhs 296 3.89e-13 1okgA 373 1.72e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.61e-10 1wv9A 94 7.90e-10 2b4uA 335 3.979 2b4pA 334 5.123 2c46A 241 6.290 2c3zA 222 8.283 2f46A 156 8.701 2fe7A 166 10.12 d.108.1.1 133325 1qgoA 264 10.98 c.92.1.2 35596 1d5rA 324 10.99 b.7.1.1,c.45.1.1 23181,32697 2dy0A 190 11.68 1f60A 458 12.00 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1d2eA 397 13.16 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1ywfA 296 13.22 c.45.1.5 124144 1yn9A 169 14.96 1zclA 180 15.85 1yz4A 160 15.91 1wrmA 165 16.63 1fpzA 212 20.18 c.45.1.1 59976 2i6jA 161 23.18 2p1zA 180 24.85 2ps1A 226 24.88 2eo5A 419 25.64 1vhrA 184 26.11 c.45.1.1 32651 2j16A 182 27.21 2cftA 298 32.45 5nulA 138 32.71 c.23.5.1 31191 1lh0A 213 32.83 c.61.1.1 73896 1su8A 636 33.43 e.26.1.2 98999 1qb7A 236 34.04 c.61.1.1 34087 3b2yA 275 35.57 1y0eA 223 36.59 c.1.2.5 116297 1oroA 213 36.71 c.61.1.1 34093 1zsqA 528 38.54 b.55.1.8,c.45.1.3 125616,125617 2esbA 188 38.86 1ynfA 458 43.48 d.126.1.7 123723 2dvmA 439 44.00 1jnyA 435 44.20 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1p15A 253 44.53 c.45.1.2 93894 1mxgA 435 46.05 b.71.1.1,c.1.8.1 85193,85194 2c78A 405 46.34 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1larA 575 46.78 c.45.1.2,c.45.1.2 32693,32694 1exmA 405 46.98 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1wchA 315 47.09 c.45.1.2 114508 1jlnA 297 48.08 c.45.1.2 63172 1kpgA 287 48.28 c.66.1.18 68735 1l1eA 287 49.04 c.66.1.18 73454 1zzwA 149 49.12 3bfxA 296 49.85 2bzlA 325 50.23 2bijA 305 50.40 1a8y 367 51.04 1j7xA 302 51.09 c.14.1.2 66425 1zckA 154 53.15 2c2xA 281 53.50 2yzkA 178 54.96 1npyA 271 56.14 c.2.1.7,c.58.1.5 85995,85996 2a5lA 200 57.92 c.23.5.8 126176 2hcmA 164 57.98 2ph5A 480 57.99 1opr 213 58.58 1zrnA 232 59.51 c.108.1.1 43323 2oycA 306 60.79 1v04A 355 62.70 b.68.6.2 100240 3ca8A 266 62.88 5nul 138 63.83 1vrvA 101 64.00 2hxpA 155 65.10 2fh7A 595 68.14 1o1yA 239 68.57 c.23.16.1 86554 1rzfH 235 69.14 b.1.1.1,b.1.1.2 98150,98151 3cwvA 369 69.38 1vchA 175 69.48 c.61.1.1 119980 2hhjA 267 70.89 c.60.1.1 136497 2ywmA 229 76.16 1pa1A 310 79.46 c.45.1.2 94404 2gagB 405 79.80 1y0bA 197 80.67 c.61.1.1 122476 2ia4A 287 83.17 2imgA 151 83.32 2hi0A 240 85.28