# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	3.02e-13	c.46.1.4	114639
2oucA	142	1.21e-12		
2hhgA	139	1.75e-12		
1e0cA	271	2.87e-12	c.46.1.2,c.46.1.2	32717,32718
2gwfA	157	3.44e-12	c.46.1.4	135802
1uarA	285	4.64e-12	c.46.1.2,c.46.1.2	107762,107763
2j6pA	152	7.68e-12		
1qb0A	211	1.40e-11	c.46.1.1	32699
1yt8A	539	1.74e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1rhsA	296	2.12e-11	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	4.26e-11	c.46.1.1	123699
1gmxA	108	4.68e-11	c.46.1.3	65355
2a2kA	175	6.18e-11		
1c25	161	7.67e-11		
2fsxA	148	1.43e-10		
1t3kA	152	2.93e-10	c.46.1.1	106357
1rhs	296	8.69e-10		
1okgA	373	4.70e-09	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.12e-07		
1wv9A	94	3.01e-06		
1yn9A	169	2.501		
2b4pA	334	3.702		
2f46A	156	4.260		
2b4uA	335	5.047		
2c46A	241	6.665		
1vhrA	184	7.989	c.45.1.1	32651
2r0bA	154	13.50		
1zclA	180	13.75		
1d5rA	324	13.99	b.7.1.1,c.45.1.1	23181,32697
1fpzA	212	16.09	c.45.1.1	59976
2imgA	151	16.44		
2iw0A	254	16.90	c.6.2.3	137737
1zzwA	149	18.19		
1y0eA	223	18.36	c.1.2.5	116297
1yz4A	160	19.38		
1x24A	180	20.88		
1npyA	271	22.67	c.2.1.7,c.58.1.5	85995,85996
2hi0A	240	23.76		
2c3zA	222	23.84		
2pt0A	340	24.50		
1i9sA	210	25.23	c.45.1.1	62099
2nt2A	145	25.47		
1j7xA	302	26.65	c.14.1.2	66425
1wrmA	165	26.96		
2hxpA	155	30.40		
2oq2A	261	33.69		
2p4dA	172	35.23		
2f4dA	184	35.58		
1rxdA	159	35.59	c.45.1.1	111959
1x31B	404	36.57		
2hcmA	164	38.78		
2aeeA	211	39.11	c.61.1.1	126620
3bxpA	277	46.15		
2j16A	182	46.80		
2gagB	405	47.04		
2go7A	207	47.24	c.108.1.6	135434
2esbA	188	48.13		
3ca8A	266	49.63		
1jlnA	297	54.04	c.45.1.2	63172
2i6jA	161	55.62		
1qb7A	236	56.53	c.61.1.1	34087
1qgoA	264	61.69	c.92.1.2	35596
1bf6A	291	64.56	c.1.9.3	29065
1u24A	337	66.22	c.45.1.4	112968
1zckA	154	70.93		
2p1zA	180	75.76		
2cftA	298	76.83		
1vchA	175	77.92	c.61.1.1	119980
2nrhA	219	80.73	c.55.1.13,c.55.1.13	138523,138524
1jx6A	342	81.49	c.93.1.1	67406
3b2yA	275	85.04		
2fdrA	229	88.19	c.108.1.6	133319
1usgA	346	88.71	c.93.1.1	99864
1pswA	348	89.14	c.87.1.7	88287
2b49A	287	89.67