# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	9.42e-11	c.46.1.4	114639
1yt8A	539	1.39e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oucA	142	2.41e-10		
2hhgA	139	2.97e-10		
1uarA	285	3.94e-10	c.46.1.2,c.46.1.2	107762,107763
2j6pA	152	4.73e-10		
1e0cA	271	5.61e-10	c.46.1.2,c.46.1.2	32717,32718
2gwfA	157	1.68e-09	c.46.1.4	135802
1rhsA	296	1.70e-09	c.46.1.2,c.46.1.2	32703,32704
1qb0A	211	1.86e-09	c.46.1.1	32699
1ymkA	175	3.25e-09	c.46.1.1	123699
1gmxA	108	3.35e-09	c.46.1.3	65355
1c25	161	5.88e-09		
2a2kA	175	7.24e-09		
1rhs	296	8.35e-09		
1t3kA	152	1.31e-08	c.46.1.1	106357
2fsxA	148	1.99e-08		
1okgA	373	5.89e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	2.76e-07		
1wv9A	94	2.65e-06		
1yn9A	169	5.363		
2b4uA	335	5.917		
1vhrA	184	6.993	c.45.1.1	32651
1d5rA	324	7.466	b.7.1.1,c.45.1.1	23181,32697
2b4pA	334	9.296		
2c46A	241	9.844		
2f46A	156	12.42		
2fh7A	595	12.60		
1x24A	180	21.62		
1zclA	180	22.53		
1larA	575	23.30	c.45.1.2,c.45.1.2	32693,32694
1jlnA	297	25.87	c.45.1.2	63172
1yz4A	160	26.55		
1j7xA	302	31.60	c.14.1.2	66425
1zc0A	309	33.49		
2p4dA	172	34.23		
2vc7A	314	34.44		
2pa5A	314	34.60		
1i9sA	210	34.83	c.45.1.1	62099
1oheA	348	35.59	c.45.1.1,c.45.1.1	87013,87014
3b2yA	275	35.72		
2imgA	151	36.56		
1fpzA	212	37.87	c.45.1.1	59976
2pt0A	340	39.44		
2hc1A	291	39.82		
1xxpA	306	41.37	c.45.1.2	122423
1zsqA	528	41.73	b.55.1.8,c.45.1.3	125616,125617
1y0eA	223	42.28	c.1.2.5	116297
2himA	358	45.59		
2esbA	188	46.85		
2r0bA	154	47.22		
2j16A	182	47.45		
2iw0A	254	47.48	c.6.2.3	137737
1zckA	154	48.23		
2b49A	287	49.62		
2pbnA	313	50.23		
1thtA	305	50.30	c.69.1.13	34711
2h4vA	320	50.37		
2p6xA	309	51.87		
2ooqA	286	51.95		
2i75A	320	52.69		
1zzwA	149	56.45		
2hi0A	240	61.08		
2hcmA	164	61.35		
2i6jA	161	62.40		
1npyA	271	63.28	c.2.1.7,c.58.1.5	85995,85996
1u24A	337	63.40	c.45.1.4	112968
2bijA	305	67.76		
2dxnA	274	68.96		
1qgoA	264	69.39	c.92.1.2	35596
2bzlA	325	69.71		
1ywfA	296	70.03	c.45.1.5	124144
2oq2A	261	71.56		
1vjrA	271	72.96	c.108.1.14	100832
2eo5A	419	74.04		
1rxdA	159	75.62	c.45.1.1	111959
3bxpA	277	76.15		
1p15A	253	76.70	c.45.1.2	93894
1zodA	433	77.58	c.67.1.4	125437
2c3zA	222	77.85		
2ph5A	480	85.37		
1lw3A	657	86.36	b.55.1.8,c.45.1.3	91152,91153
2d2jA	329	87.07	c.1.9.3	131175
1wchA	315	87.65	c.45.1.2	114508
1i0dA	332	88.55	c.1.9.3	61487
1z7gA	217	89.27	c.61.1.1	124624
2cm2A	304	89.86	c.45.1.2	130610