# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 5.76e-12 1whbA 157 8.08e-12 c.46.1.4 114639 2gwfA 157 1.20e-11 c.46.1.4 135802 1gmxA 108 1.38e-11 c.46.1.3 65355 1uarA 285 6.38e-11 c.46.1.2,c.46.1.2 107762,107763 1e0cA 271 7.78e-11 c.46.1.2,c.46.1.2 32717,32718 1yt8A 539 1.11e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhs 296 1.49e-10 1rhsA 296 2.02e-10 c.46.1.2,c.46.1.2 32703,32704 2oucA 142 3.91e-10 2j6pA 152 5.15e-10 1qb0A 211 6.09e-09 c.46.1.1 32699 2a2kA 175 1.49e-08 1ymkA 175 1.61e-08 c.46.1.1 123699 1c25 161 4.93e-08 1okgA 373 9.32e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fsxA 148 5.38e-07 2eg4A 230 6.89e-07 1t3kA 152 1.55e-06 c.46.1.1 106357 1wv9A 94 7.39e-05 1i9sA 210 0.1897 c.45.1.1 62099 2c46A 241 0.8274 1yn9A 169 1.679 2b82A 211 2.325 c.108.1.12 128057 1oheA 348 3.540 c.45.1.1,c.45.1.1 87013,87014 1s2oA 244 4.790 c.108.1.10 118846 3cvjA 243 4.825 1zclA 180 5.453 1rmwA 212 5.592 1zckA 154 8.438 2j9iA 421 8.906 2rbkA 261 8.983 1d5rA 324 14.44 b.7.1.1,c.45.1.1 23181,32697 1wd5A 208 15.14 c.61.1.1 114524 2hcfA 234 15.27 c.108.1.6 136333 1nriA 306 15.39 c.80.1.3 86123 1o66A 275 15.59 c.1.12.8 92547 1rkqA 282 15.85 c.108.1.10 97621 1f52A 468 15.88 d.15.9.1,d.128.1.1 37839,41169 1l6rA 227 17.16 c.108.1.10 77768 2egxA 269 17.25 1lw3A 657 18.71 b.55.1.8,c.45.1.3 91152,91153 2pibA 216 19.80 1bd3A 243 19.89 c.61.1.1 34098 1ymqA 261 20.23 c.108.1.10 123707 1edzA 320 20.61 c.2.1.7,c.58.1.2 30287,33935 1htqA 477 20.70 d.15.9.1,d.128.1.1 71035,71036 2a5hA 416 20.79 1qb7A 236 22.56 c.61.1.1 34087 1l1qA 186 23.82 c.61.1.1 77653 2ehjA 208 24.81 2hdoA 209 24.87 c.108.1.6 136345 2imgA 151 25.63 1m3uA 264 26.92 c.1.12.8 84784 1ltqA 301 27.13 c.108.1.9,c.37.1.1 78208,78209 2i6jA 161 27.64 2z1dA 372 28.93 1lsuA 147 29.72 c.2.1.9 74250 2fdrA 229 29.88 c.108.1.6 133319 1rxdA 159 29.99 c.45.1.1 111959 2r0bA 154 30.55 2nv1A 305 30.69 2obwA 258 32.95 1zrnA 232 33.68 c.108.1.1 43323 2vq3A 215 33.75 1pa7A 130 34.05 a.40.1.1 94410 1zzwA 149 34.31 1goxA 369 35.50 c.1.4.1 28607 2j4hA 193 36.31 2z2mC 125 37.96 1o08A 221 37.96 c.108.1.6 86525 1fpzA 212 39.12 c.45.1.1 59976 1nslA 184 39.53 d.108.1.1 86137 2hxpA 155 39.74 2a0uA 383 40.01 2hf2A 283 40.55 2cvbA 188 41.25 c.47.1.10 130859 1ujnA 348 42.13 e.22.1.1 99460 1omrA 201 43.00 a.39.1.5 93349 1xkzA 255 43.52 e.3.1.1 115426 2zc3C 125 44.05 1xrsB 262 44.10 c.23.6.1,d.230.4.1 115884,115885 2f46A 156 44.18 1lssA 140 44.70 c.2.1.9 74246 1mumA 295 44.70 c.1.12.7 85108 2dbqA 334 45.13 2bvcA 486 46.25 d.15.9.1,d.128.1.1 129243,129244 2qrlA 394 46.33 2e55A 208 47.20 2hp1A 432 47.83 1ggzA 148 48.35 a.39.1.5 70176 1xg4A 295 50.36 2dt9A 167 50.47 1bf6A 291 50.72 c.1.9.3 29065 2h0rA 216 50.81 1zsqA 528 51.26 b.55.1.8,c.45.1.3 125616,125617 2cftA 298 51.37 2hmvA 144 51.49 c.2.1.9 136615 1aq0A 306 52.80 c.1.8.3 28842 1o0sA 605 53.05 c.2.1.7,c.58.1.3 86540,86541 1ydnA 295 53.07 1r3eA 309 54.16 b.122.1.1,d.265.1.2 96907,96908 2no4A 240 54.18 2uyoA 310 54.38 2fckA 181 55.84 d.108.1.1 133272 1rlmA 271 55.86 c.108.1.10 111860 2g1uA 155 58.65 3bk2A 562 59.49 2oycA 306 59.69 1nrfA 262 59.81 e.3.1.1 92086 2nt2A 145 62.21 2epjA 434 64.08 1a0p 290 64.54 1fjgB 256 64.65 c.23.15.1 31400 1s4kA 120 65.18 a.35.1.6 105254 2b4pA 334 65.77 1a4iA 301 65.88 c.2.1.7,c.58.1.2 30278,33926 3bojA 213 67.37 2igbA 179 67.39 2ozhA 142 67.58 2qahA 303 68.42 1b0aA 288 69.36 c.2.1.7,c.58.1.2 30286,33934 2r01A 210 69.99 1c1dA 355 70.86 c.2.1.7,c.58.1.1 30270,33918 1qk8A 146 71.51 c.47.1.10 33061 1qyiA 384 72.84 c.108.1.13 96595 1wljA 189 73.52 c.55.3.5 114734 1k07A 263 73.81 d.157.1.1 77218 2qhqA 125 75.97 1amf 233 76.25 2b8tA 223 76.29 c.37.1.24,g.39.1.14 128109,128110 1xviA 275 78.04 c.108.1.10 116088 1v7zA 260 78.13 c.125.1.1 100488 2qedA 258 78.49 1t5oA 351 80.28 c.124.1.5 106459 1u04A 771 80.57 b.34.14.1,c.55.3.10 107539,107540 2bl0B 145 81.70 2ft0A 235 82.44 2gsaA 432 82.76 c.67.1.4 34446 1atg 231 84.10 2i8gA 151 84.47 2hlkA 255 87.55 1z6mA 175 89.18 c.47.1.13 124529 2eh6A 375 89.32 1nrzA 164 89.59 c.38.1.1 86131