PFRMAT TS TARGET T0514 AUTHOR SAM-T08-server METHOD This prediction was created by the SAM-T08 server, which uses target METHOD and template HMMs to search a large template library and to align the METHOD target to the templates. Undertaker is then used to choose the most METHOD protein-like models from among the alignments, and to do further METHOD optimization to attempt to remove breaks and clashes. METHOD REMARK 6 REMARK 6 T0514 model 4 Fri Jul 18 16:26:15 2008 MODEL 4 PARENT N/A ATOM 2 N ARG 82 -4.422 -9.278 -1.417 1.00 0.00 ATOM 3 CA ARG 82 -3.787 -8.482 -0.373 1.00 0.00 ATOM 4 CB ARG 82 -2.370 -8.990 -0.098 1.00 0.00 ATOM 5 CG ARG 82 -2.317 -10.391 0.491 1.00 0.00 ATOM 6 CD ARG 82 -3.010 -10.448 1.844 1.00 0.00 ATOM 7 NE ARG 82 -2.366 -9.578 2.825 1.00 0.00 ATOM 8 CZ ARG 82 -2.930 -9.190 3.964 1.00 0.00 ATOM 9 NH1 ARG 82 -2.269 -8.398 4.797 1.00 0.00 ATOM 10 NH2 ARG 82 -4.156 -9.596 4.269 1.00 0.00 ATOM 11 O ARG 82 -3.030 -6.676 -1.764 1.00 0.00 ATOM 12 C ARG 82 -3.695 -7.017 -0.785 1.00 0.00 ATOM 13 N THR 83 -4.368 -6.154 -0.032 1.00 0.00 ATOM 14 CA THR 83 -4.364 -4.724 -0.317 1.00 0.00 ATOM 15 CB THR 83 -5.694 -4.269 -0.944 1.00 0.00 ATOM 16 CG2 THR 83 -5.661 -2.779 -1.243 1.00 0.00 ATOM 17 OG1 THR 83 -5.920 -4.983 -2.166 1.00 0.00 ATOM 18 O THR 83 -4.830 -4.130 1.963 1.00 0.00 ATOM 19 C THR 83 -4.151 -3.916 0.959 1.00 0.00 ATOM 20 N CYS 84 -3.204 -2.985 0.912 1.00 0.00 ATOM 21 CA CYS 84 -2.902 -2.143 2.064 1.00 0.00 ATOM 22 CB CYS 84 -1.936 -1.025 1.666 1.00 0.00 ATOM 23 SG CYS 84 -0.933 -0.382 3.043 1.00 0.00 ATOM 24 O CYS 84 -5.009 -0.998 1.927 1.00 0.00 ATOM 25 C CYS 84 -4.176 -1.544 2.650 1.00 0.00 ATOM 26 N VAL 85 -4.320 -1.650 3.969 1.00 0.00 ATOM 27 CA VAL 85 -5.492 -1.117 4.654 1.00 0.00 ATOM 28 CB VAL 85 -5.706 -1.804 6.015 1.00 0.00 ATOM 29 CG1 VAL 85 -5.205 -3.240 5.975 1.00 0.00 ATOM 30 CG2 VAL 85 -5.016 -1.021 7.121 1.00 0.00 ATOM 31 O VAL 85 -6.358 1.117 4.817 1.00 0.00 ATOM 32 C VAL 85 -5.368 0.386 4.869 1.00 0.00 ATOM 33 N PRO 86 -4.143 0.844 5.111 1.00 0.00 ATOM 34 CA PRO 86 -3.888 2.264 5.334 1.00 0.00 ATOM 35 CB PRO 86 -2.405 2.431 4.994 1.00 0.00 ATOM 36 CG PRO 86 -1.785 1.128 5.376 1.00 0.00 ATOM 37 CD PRO 86 -2.749 0.062 4.936 1.00 0.00 ATOM 38 O PRO 86 -4.645 3.079 3.208 1.00 0.00 ATOM 39 C PRO 86 -4.769 3.122 4.432 1.00 0.00 ATOM 40 N ALA 87 -5.657 3.897 5.044 1.00 0.00 ATOM 41 CA ALA 87 -6.558 4.765 4.296 1.00 0.00 ATOM 42 CB ALA 87 -7.471 5.525 5.245 1.00 0.00 ATOM 43 O ALA 87 -5.452 6.866 3.946 1.00 0.00 ATOM 44 C ALA 87 -5.777 5.781 3.469 1.00 0.00 ATOM 45 N GLY 88 -5.477 5.418 2.225 1.00 0.00 ATOM 46 CA GLY 88 -4.735 6.309 1.353 1.00 0.00 ATOM 47 O GLY 88 -2.420 6.341 0.749 1.00 0.00 ATOM 48 C GLY 88 -3.456 5.679 0.834 1.00 0.00 ATOM 49 N CYS 89 -3.525 4.397 0.490 1.00 0.00 ATOM 50 CA CYS 89 -2.365 3.679 -0.020 1.00 0.00 ATOM 51 CB CYS 89 -1.685 2.901 1.108 1.00 0.00 ATOM 52 SG CYS 89 0.084 2.574 0.826 1.00 0.00 ATOM 53 O CYS 89 -3.439 1.721 -0.907 1.00 0.00 ATOM 54 C CYS 89 -2.766 2.726 -1.141 1.00 0.00 ATOM 55 N ILE 90 -2.345 3.045 -2.361 1.00 0.00 ATOM 56 CA ILE 90 -2.661 2.218 -3.520 1.00 0.00 ATOM 57 CB ILE 90 -2.829 3.070 -4.792 1.00 0.00 ATOM 58 CG1 ILE 90 -3.952 4.092 -4.604 1.00 0.00 ATOM 59 CG2 ILE 90 -3.175 2.188 -5.982 1.00 0.00 ATOM 60 CD1 ILE 90 -3.977 5.173 -5.663 1.00 0.00 ATOM 61 O ILE 90 -0.803 1.325 -4.753 1.00 0.00 ATOM 62 C ILE 90 -1.550 1.205 -3.783 1.00 0.00 ATOM 63 N VAL 91 -1.449 0.208 -2.911 1.00 0.00 ATOM 64 CA VAL 91 -0.432 -0.826 -3.049 1.00 0.00 ATOM 65 CB VAL 91 0.764 -0.572 -2.112 1.00 0.00 ATOM 66 CG1 VAL 91 1.449 0.739 -2.467 1.00 0.00 ATOM 67 CG2 VAL 91 0.300 -0.496 -0.666 1.00 0.00 ATOM 68 O VAL 91 -2.000 -2.315 -2.004 1.00 0.00 ATOM 69 C VAL 91 -0.999 -2.202 -2.711 1.00 0.00 ATOM 70 N PRO 92 -0.350 -3.245 -3.219 1.00 0.00 ATOM 71 CA PRO 92 -0.789 -4.613 -2.970 1.00 0.00 ATOM 72 CB PRO 92 -2.103 -4.727 -3.745 1.00 0.00 ATOM 73 CG PRO 92 -1.969 -3.740 -4.855 1.00 0.00 ATOM 74 CD PRO 92 -1.181 -2.588 -4.295 1.00 0.00 ATOM 75 O PRO 92 1.038 -5.319 -4.359 1.00 0.00 ATOM 76 C PRO 92 0.242 -5.620 -3.468 1.00 0.00 ATOM 77 N ILE 93 0.224 -6.815 -2.888 1.00 0.00 ATOM 78 CA ILE 93 1.159 -7.865 -3.272 1.00 0.00 ATOM 79 CB ILE 93 2.391 -7.891 -2.350 1.00 0.00 ATOM 80 CG1 ILE 93 3.115 -6.542 -2.390 1.00 0.00 ATOM 81 CG2 ILE 93 3.365 -8.972 -2.791 1.00 0.00 ATOM 82 CD1 ILE 93 3.824 -6.269 -3.699 1.00 0.00 ATOM 83 O ILE 93 -0.003 -9.643 -2.147 1.00 0.00 ATOM 84 C ILE 93 0.495 -9.237 -3.197 1.00 0.00 ATOM 85 N VAL 94 0.493 -9.950 -4.320 1.00 0.00 ATOM 86 CA VAL 94 -0.110 -11.276 -4.383 1.00 0.00 ATOM 87 CB VAL 94 0.261 -12.002 -5.689 1.00 0.00 ATOM 88 CG1 VAL 94 -0.200 -13.451 -5.642 1.00 0.00 ATOM 89 CG2 VAL 94 -0.403 -11.328 -6.880 1.00 0.00 ATOM 90 O VAL 94 -0.447 -12.814 -2.573 1.00 0.00 ATOM 91 C VAL 94 0.358 -12.147 -3.224 1.00 0.00 ATOM 92 N PHE 95 1.662 -12.139 -2.971 1.00 0.00 ATOM 93 CA PHE 95 2.236 -12.929 -1.890 1.00 0.00 ATOM 94 CB PHE 95 3.705 -13.242 -2.175 1.00 0.00 ATOM 95 CG PHE 95 3.910 -14.245 -3.273 1.00 0.00 ATOM 96 CD1 PHE 95 4.171 -13.831 -4.569 1.00 0.00 ATOM 97 CD2 PHE 95 3.840 -15.602 -3.013 1.00 0.00 ATOM 98 CE1 PHE 95 4.360 -14.754 -5.580 1.00 0.00 ATOM 99 CE2 PHE 95 4.027 -16.525 -4.026 1.00 0.00 ATOM 100 CZ PHE 95 4.286 -16.106 -5.304 1.00 0.00 ATOM 101 O PHE 95 2.493 -11.000 -0.485 1.00 0.00 ATOM 102 C PHE 95 2.159 -12.181 -0.562 1.00 0.00 ATOM 103 N ASP 96 1.717 -12.879 0.479 1.00 0.00 ATOM 104 CA ASP 96 1.596 -12.281 1.804 1.00 0.00 ATOM 105 CB ASP 96 1.113 -13.320 2.818 1.00 0.00 ATOM 106 CG ASP 96 -0.350 -13.672 2.640 1.00 0.00 ATOM 107 OD1 ASP 96 -1.048 -12.950 1.897 1.00 0.00 ATOM 108 OD2 ASP 96 -0.799 -14.670 3.242 1.00 0.00 ATOM 109 O ASP 96 3.001 -10.700 2.938 1.00 0.00 ATOM 110 C ASP 96 2.940 -11.738 2.279 1.00 0.00 ATOM 111 N LYS 97 4.012 -12.446 1.941 1.00 0.00 ATOM 112 CA LYS 97 5.354 -12.034 2.335 1.00 0.00 ATOM 113 CB LYS 97 6.384 -13.081 1.904 1.00 0.00 ATOM 114 CG LYS 97 7.816 -12.732 2.277 1.00 0.00 ATOM 115 CD LYS 97 8.779 -13.830 1.854 1.00 0.00 ATOM 116 CE LYS 97 10.213 -13.473 2.212 1.00 0.00 ATOM 117 NZ LYS 97 11.171 -14.526 1.774 1.00 0.00 ATOM 118 O LYS 97 6.011 -9.725 2.377 1.00 0.00 ATOM 119 C LYS 97 5.727 -10.704 1.688 1.00 0.00 ATOM 120 N ASN 98 5.728 -10.677 0.359 1.00 0.00 ATOM 121 CA ASN 98 6.067 -9.468 -0.381 1.00 0.00 ATOM 122 CB ASN 98 5.864 -9.688 -1.881 1.00 0.00 ATOM 123 CG ASN 98 7.113 -10.214 -2.563 1.00 0.00 ATOM 124 ND2 ASN 98 7.640 -11.323 -2.058 1.00 0.00 ATOM 125 OD1 ASN 98 7.596 -9.630 -3.533 1.00 0.00 ATOM 126 O ASN 98 5.541 -7.132 -0.192 1.00 0.00 ATOM 127 C ASN 98 5.224 -8.287 0.090 1.00 0.00 ATOM 128 N TYR 99 4.146 -8.586 0.808 1.00 0.00 ATOM 129 CA TYR 99 3.256 -7.549 1.319 1.00 0.00 ATOM 130 CB TYR 99 1.849 -8.109 1.534 1.00 0.00 ATOM 131 CG TYR 99 0.830 -7.068 1.941 1.00 0.00 ATOM 132 CD1 TYR 99 0.345 -6.151 1.020 1.00 0.00 ATOM 133 CD2 TYR 99 0.359 -7.008 3.247 1.00 0.00 ATOM 134 CE1 TYR 99 -0.586 -5.195 1.382 1.00 0.00 ATOM 135 CE2 TYR 99 -0.572 -6.061 3.628 1.00 0.00 ATOM 136 CZ TYR 99 -1.044 -5.150 2.682 1.00 0.00 ATOM 137 OH TYR 99 -1.970 -4.200 3.047 1.00 0.00 ATOM 138 O TYR 99 3.494 -5.859 3.008 1.00 0.00 ATOM 139 C TYR 99 3.761 -7.007 2.653 1.00 0.00 ATOM 140 N VAL 100 4.492 -7.840 3.386 1.00 0.00 ATOM 141 CA VAL 100 5.036 -7.444 4.678 1.00 0.00 ATOM 142 CB VAL 100 5.774 -8.610 5.363 1.00 0.00 ATOM 143 CG1 VAL 100 6.484 -8.127 6.618 1.00 0.00 ATOM 144 CG2 VAL 100 4.793 -9.704 5.755 1.00 0.00 ATOM 145 O VAL 100 5.826 -5.210 5.074 1.00 0.00 ATOM 146 C VAL 100 6.029 -6.296 4.528 1.00 0.00 ATOM 147 N ALA 101 7.100 -6.541 3.783 1.00 0.00 ATOM 148 CA ALA 101 8.125 -5.527 3.558 1.00 0.00 ATOM 149 CB ALA 101 9.083 -5.974 2.466 1.00 0.00 ATOM 150 O ALA 101 7.890 -3.137 3.604 1.00 0.00 ATOM 151 C ALA 101 7.497 -4.205 3.131 1.00 0.00 ATOM 152 N ALA 102 6.519 -4.281 2.234 1.00 0.00 ATOM 153 CA ALA 102 5.835 -3.090 1.745 1.00 0.00 ATOM 154 CB ALA 102 4.513 -3.467 1.093 1.00 0.00 ATOM 155 O ALA 102 5.746 -0.914 2.758 1.00 0.00 ATOM 156 C ALA 102 5.546 -2.122 2.889 1.00 0.00 ATOM 157 N LEU 103 5.072 -2.660 4.007 1.00 0.00 ATOM 158 CA LEU 103 4.753 -1.844 5.173 1.00 0.00 ATOM 159 CB LEU 103 3.976 -2.665 6.204 1.00 0.00 ATOM 160 CG LEU 103 2.562 -3.090 5.806 1.00 0.00 ATOM 161 CD1 LEU 103 1.967 -4.023 6.849 1.00 0.00 ATOM 162 CD2 LEU 103 1.651 -1.879 5.679 1.00 0.00 ATOM 163 O LEU 103 6.016 -0.262 6.464 1.00 0.00 ATOM 164 C LEU 103 6.022 -1.321 5.836 1.00 0.00 ATOM 165 N ARG 104 7.109 -2.073 5.694 1.00 0.00 ATOM 166 CA ARG 104 8.387 -1.686 6.279 1.00 0.00 ATOM 167 CB ARG 104 9.214 -2.925 6.626 1.00 0.00 ATOM 168 CG ARG 104 8.610 -3.789 7.721 1.00 0.00 ATOM 169 CD ARG 104 9.512 -4.966 8.056 1.00 0.00 ATOM 170 NE ARG 104 8.925 -5.830 9.079 1.00 0.00 ATOM 171 CZ ARG 104 9.509 -6.925 9.555 1.00 0.00 ATOM 172 NH1 ARG 104 8.901 -7.649 10.485 1.00 0.00 ATOM 173 NH2 ARG 104 10.699 -7.293 9.100 1.00 0.00 ATOM 174 O ARG 104 10.173 -0.190 5.695 1.00 0.00 ATOM 175 C ARG 104 9.194 -0.830 5.310 1.00 0.00 TER END