# List of top-scoring protein chains for T0514.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qgjA	300	11.94	a.93.1.1	18691
1bgpA	309	12.72	a.93.1.1	18690
1x3cA	73	14.63	g.37.1.1	121660
1t1iA	364	17.92	c.41.1.2	106248
1gt91	357	20.27		
1t1gA	364	22.43	c.41.1.2	106246
1t1eA	552	24.11	c.41.1.2,d.58.3.2	106244,106245
1gx2A	309	27.40	a.93.1.1	83360
1gw2A	308	28.18	a.93.1.1	83341
1gwuA	309	28.95	a.93.1.1	83351
1gwoA	309	29.16	a.93.1.1	83349
2atjA	308	29.65	a.93.1.1	18675
1gwtA	309	29.70	a.93.1.1	83350
1hchA	306	29.71	a.93.1.1	70965
7atjA	308	29.71	a.93.1.1	18673
1w4wA	323	30.28	a.93.1.1	120640
4atjA	309	41.46	a.93.1.1	81266
1kufA	203	47.87	d.92.1.9	73007
1nwvA	129	48.42	g.18.1.1,g.18.1.1	86304,86305
1pa2A	306	49.45	a.93.1.1	18693
1zvjA	364	50.78		
1sioA	364	50.84	c.41.1.2	98888
2dyuA	334	55.35		
1kzmA	308	59.18	a.93.1.1	77637
1cvrA	435	73.22	b.1.18.12,c.17.1.2	21949,31006
1zvkA	358	82.18		
1siuA	364	83.32	c.41.1.2	98891
1qtyT	101	87.00	b.1.1.4	21769
1kugA	203	87.80	d.92.1.9	73008
1rv6X	100	88.17	b.1.1.4	97914
1fltX	95	89.52	b.1.1.4	21765