# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ikpA	613	3.344	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1x3cA	73	3.502	g.37.1.1	121660
2q9oA	559	4.148		
1i6pA	220	5.021	c.53.2.1	61848
3cbnA	151	7.754		
2nadA	393	10.42	c.2.1.4,c.23.12.1	30090,31350
1svdM	110	10.46	d.73.1.1	119059
1ad2A	228	13.47	e.24.1.1	43353
2dgkA	452	20.32		
2gm6A	208	20.85		
1oohA	126	21.36	a.39.2.1	93383
1ledA	243	23.47	b.29.1.1	24039
2nacA	393	28.31	c.2.1.4,c.23.12.1	30088,31348
1uhvA	500	29.21	b.71.1.2,c.1.8.3	99402,99403
1gkgA	136	30.42	g.18.1.1,g.18.1.1	70219,70220
1fnlA	175	30.65	b.1.1.4,b.1.1.4	21783,21784
1led	243	34.50		
2qmaA	497	40.66		
2aukA	190	41.45		
487dH	224	41.61	i.1.1.2	45835
2z2nA	299	42.69		
2hzqA	174	43.92		
1rscI	111	45.16	d.73.1.1	118620
1wq3A	322	45.42		
2fepA	289	46.38		
1nrkA	328	50.49	b.44.2.1,d.250.1.1	92089,92090
1jjtA	228	51.36	d.157.1.1	63139
1i2aA	219	53.43	e.24.1.1	90660
2d0iA	333	54.92		
3bjhA	119	54.93		
3cniA	156	55.89		
2v2fF	390	55.99		
2dgmA	466	61.46	c.67.1.6	131508
1bihA	395	61.77	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
2p3wA	112	64.19		
2hqhE	25	64.72		
1wj2A	78	64.72	g.79.1.1	114689
2rjoA	332	65.62		
1s4iA	175	67.72		
1rblI	109	68.28	d.73.1.1	118599
1xtoA	311	69.69	d.157.1.6	116030
1qfmA	710	72.81	b.69.7.1,c.69.1.4	27673,34641
1ifrA	121	75.51	b.1.16.1	71203
1q7fA	286	75.71	b.68.9.1	96036
2aqpA	164	75.94		
1azdA	237	79.27	b.29.1.1	24020
1ajaA	449	79.89	c.76.1.1	35010
2bjfA	329	86.36		
1jsdB	176	86.45	h.3.1.1	63259
2aqqA	164	88.27