# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x3cA	73	2.739	g.37.1.1	121660
1ikpA	613	5.300	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1i6pA	220	7.380	c.53.2.1	61848
1uhvA	500	9.534	b.71.1.2,c.1.8.3	99402,99403
1gkgA	136	9.886	g.18.1.1,g.18.1.1	70219,70220
2gm6A	208	10.75		
1svdM	110	11.06	d.73.1.1	119059
2nadA	393	12.74	c.2.1.4,c.23.12.1	30090,31350
3cbnA	151	14.44		
1ad2A	228	15.31	e.24.1.1	43353
2z2nA	299	18.05		
1oohA	126	23.20	a.39.2.1	93383
2dgkA	452	29.10		
1ledA	243	29.55	b.29.1.1	24039
2hzqA	174	34.27		
2nacA	393	34.80	c.2.1.4,c.23.12.1	30088,31348
2p3wA	112	36.45		
2qmaA	497	36.47		
487dH	224	36.71	i.1.1.2	45835
1khiA	176	40.20	b.34.5.2,b.40.4.5	77408,77409
1jjtA	228	40.74	d.157.1.1	63139
2aukA	190	45.93		
2hqhE	25	49.55		
1ush	550	49.67		
1q7fA	286	50.01	b.68.9.1	96036
2fepA	289	52.56		
1led	243	54.82		
2ghsA	326	57.23	b.68.6.1	135209
1nrkA	328	58.55	b.44.2.1,d.250.1.1	92089,92090
2dgmA	466	60.71	c.67.1.6	131508
1xtoA	311	66.51	d.157.1.6	116030
1fhgA	154	70.19	b.1.1.4	21706
1oatA	439	74.04	c.67.1.4	34461
1s4iA	175	74.87		
1esoA	154	75.16	b.1.8.1	22293
1fnlA	175	77.79	b.1.1.4,b.1.1.4	21783,21784
3cniA	156	77.81		
1rblI	109	78.39	d.73.1.1	118599
1wj2A	78	78.99	g.79.1.1	114689
8rucI	123	79.19	d.73.1.1	39629
1rscI	111	81.71	d.73.1.1	118620
1a34A	159	82.43	b.121.7.1	23286
2cjtA	131	84.60	b.7.1.1	130549
1wq3A	322	88.17