# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ikpA	613	1.569	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1x3cA	73	2.187	g.37.1.1	121660
1ad2A	228	2.734	e.24.1.1	43353
1uhvA	500	4.965	b.71.1.2,c.1.8.3	99402,99403
1xbrA	184	6.072	b.2.5.4	22458
3cbnA	151	7.733		
487dH	224	10.11	i.1.1.2	45835
1svdM	110	10.26	d.73.1.1	119059
1jjtA	228	10.74	d.157.1.1	63139
1wj2A	78	11.96	g.79.1.1	114689
1q7fA	286	12.09	b.68.9.1	96036
3brgC	427	13.20		
2gm6A	208	14.80		
2z2nA	299	16.15		
2qmaA	497	16.52		
1i6pA	220	18.36	c.53.2.1	61848
1oohA	126	19.46	a.39.2.1	93383
1gkgA	136	20.05	g.18.1.1,g.18.1.1	70219,70220
2frvB	536	20.34	e.18.1.1	43291
1khiA	176	20.48	b.34.5.2,b.40.4.5	77408,77409
1h6fA	193	21.36	b.2.5.4	70901
2d7eA	105	21.44		
2aukA	190	21.58		
1dr9A	201	26.62	b.1.1.1,b.1.1.3	19762,21684
1g5gA	481	27.59	f.12.1.1,h.3.2.1	65155,65156
2sliA	679	29.88	b.29.1.9,b.68.1.1	24274,27611
1fhgA	154	30.46	b.1.1.4	21706
2bbdA	350	32.27		
1bxoA	323	32.40	b.50.1.2	26805
1a34A	159	32.62	b.121.7.1	23286
1e96B	203	33.86	a.118.8.1	19211
1rfeA	162	38.75	b.45.1.1	111796
3bjhA	119	39.91		
1ush	550	39.94		
1vpvA	300	45.55	c.119.1.1	113975
1i2aA	219	45.91	e.24.1.1	90660
1ly2A	130	50.91	g.18.1.1,g.18.1.1	74335,74336
2qe8A	343	52.77		
2h5gA	463	54.27		
1a1aA	107	55.00	d.93.1.1	40449
1jsdB	176	58.43	h.3.1.1	63259
2bjfA	329	58.78		
1op4A	159	59.35	b.1.6.1	93397
1pzxA	289	59.75	c.119.1.1	95484
2hbpA	68	61.33		
1qu1A	155	61.53	h.3.1.1	45670
2dgmA	466	61.59	c.67.1.6	131508
1pzsA	208	62.52	b.1.8.1	104397
2hqhE	25	63.48		
2pytA	133	64.07		
1accA	735	64.16	f.11.1.1	43828
1ryp2	233	66.40		
3grsA	478	67.81	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
1s4iA	175	68.05		
1q46A	175	69.89	a.60.14.1,b.40.4.5	111594,111595
1qubA	319	70.40	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	44863,44864,44865,44866,44867
2p3wA	112	75.67		
1ow4A	129	76.10	a.39.2.1	93628
2h9fA	396	78.90		
2bpdA	142	81.02		
2dgkA	452	82.57		
1h03P	125	82.89	g.18.1.1,g.18.1.1	83411,83412
2viuB	175	83.23	h.3.1.1	45676
1nrkA	328	84.79	b.44.2.1,d.250.1.1	92089,92090
1e3dB	542	85.08	e.18.1.1	59189
1hgeB	175	85.11	h.3.1.1	45680
1qfmA	710	85.32	b.69.7.1,c.69.1.4	27673,34641
1mgpA	313	85.82	c.119.1.1	79098
2bfgA	503	89.29	b.71.1.2,c.1.8.3	128423,128424
2bsfA	176	89.66