# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ikpA	613	5.056	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1x3cA	73	6.020	g.37.1.1	121660
2q9oA	559	8.147		
1svdM	110	13.64	d.73.1.1	119059
1uhvA	500	13.76	b.71.1.2,c.1.8.3	99402,99403
3cbnA	151	14.09		
1khiA	176	16.27	b.34.5.2,b.40.4.5	77408,77409
2dgkA	452	17.27		
2gm6A	208	22.06		
2qmaA	497	25.67		
1oohA	126	26.28	a.39.2.1	93383
2z2nA	299	28.00		
1dr9A	201	28.32	b.1.1.1,b.1.1.3	19762,21684
1i6pA	220	29.36	c.53.2.1	61848
2aukA	190	31.04		
1gkgA	136	37.16	g.18.1.1,g.18.1.1	70219,70220
1ad2A	228	38.60	e.24.1.1	43353
2dt8A	280	39.29		
1wj2A	78	42.61	g.79.1.1	114689
2hqhE	25	48.63		
2nadA	393	48.90	c.2.1.4,c.23.12.1	30090,31350
2dgmA	466	49.12	c.67.1.6	131508
1a34A	159	50.54	b.121.7.1	23286
3bciA	186	55.27		
3bjhA	119	56.27		
1fnlA	175	59.92	b.1.1.4,b.1.1.4	21783,21784
1aukA	489	60.06	c.76.1.2	35030
1jjtA	228	60.29	d.157.1.1	63139
1nrkA	328	61.69	b.44.2.1,d.250.1.1	92089,92090
1vpvA	300	62.69	c.119.1.1	113975
487dH	224	75.84	i.1.1.2	45835
1r5rA	119	75.98	a.39.2.1	97104
2ghsA	326	76.80	b.68.6.1	135209
1xbrA	184	77.77	b.2.5.4	22458
3cniA	156	77.88		
1rscI	111	78.40	d.73.1.1	118620
1s4iA	175	79.47		
2aqqA	164	81.11		
2hzqA	174	83.62		
1wosA	364	85.24	b.44.2.1,d.250.1.1	109468,109469
2v2fF	390	86.41		
2aqpA	164	86.74		
1bihA	395	87.25	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
1w3oA	216	87.71	b.45.1.1	114142
1go5A	69	88.95	a.5.2.3	65410