# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q9oA	559	5.192		
1x3cA	73	5.983	g.37.1.1	121660
1ikpA	613	6.175	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1uhvA	500	10.70	b.71.1.2,c.1.8.3	99402,99403
1svdM	110	11.18	d.73.1.1	119059
3cbnA	151	15.16		
2dgkA	452	16.35		
1i6pA	220	17.98	c.53.2.1	61848
1gkgA	136	18.34	g.18.1.1,g.18.1.1	70219,70220
1oohA	126	23.77	a.39.2.1	93383
1dr9A	201	24.97	b.1.1.1,b.1.1.3	19762,21684
1ad2A	228	25.51	e.24.1.1	43353
2qmaA	497	25.79		
2aukA	190	27.91		
1ledA	243	30.13	b.29.1.1	24039
1led	243	32.34		
1khiA	176	35.33	b.34.5.2,b.40.4.5	77408,77409
1fnlA	175	36.63	b.1.1.4,b.1.1.4	21783,21784
2nadA	393	39.23	c.2.1.4,c.23.12.1	30090,31350
2hqhE	25	42.52		
2z2nA	299	43.47		
2j67A	178	46.66		
2gm6A	208	46.88		
2dgmA	466	48.70	c.67.1.6	131508
3bjhA	119	48.99		
487dH	224	50.25	i.1.1.2	45835
1nrkA	328	52.88	b.44.2.1,d.250.1.1	92089,92090
1bihA	395	53.21	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
1wj2A	78	55.16	g.79.1.1	114689
1rscI	111	55.26	d.73.1.1	118620
2v2fF	390	56.17		
2fepA	289	60.28		
1jjtA	228	63.79	d.157.1.1	63139
3cniA	156	66.66		
1rblI	109	70.25	d.73.1.1	118599
1a34A	159	71.50	b.121.7.1	23286
1r5rA	119	73.42	a.39.2.1	97104
1azdA	237	77.84	b.29.1.1	24020
1ii2A	524	79.35	c.91.1.1,c.109.1.1	66146,66147
3bciA	186	80.37		
1aukA	489	82.35	c.76.1.2	35030
1w3oA	216	87.06	b.45.1.1	114142
2dt8A	280	88.42		
1go5A	69	89.37	a.5.2.3	65410