# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q9oA	559	5.169		
1x3cA	73	5.737	g.37.1.1	121660
1ikpA	613	6.304	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1uhvA	500	11.28	b.71.1.2,c.1.8.3	99402,99403
3cbnA	151	11.94		
2dgkA	452	13.67		
1dr9A	201	16.91	b.1.1.1,b.1.1.3	19762,21684
2aukA	190	18.25		
1svdM	110	18.42	d.73.1.1	119059
1gkgA	136	23.44	g.18.1.1,g.18.1.1	70219,70220
1i6pA	220	24.89	c.53.2.1	61848
2qmaA	497	26.08		
1fnlA	175	28.54	b.1.1.4,b.1.1.4	21783,21784
1oohA	126	31.06	a.39.2.1	93383
1khiA	176	31.41	b.34.5.2,b.40.4.5	77408,77409
1ad2A	228	35.12	e.24.1.1	43353
2z2nA	299	39.10		
2j67A	178	39.49		
2hqhE	25	40.96		
1bihA	395	41.56	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
2nadA	393	41.59	c.2.1.4,c.23.12.1	30090,31350
1wj2A	78	45.90	g.79.1.1	114689
3bjhA	119	49.89		
1nrkA	328	51.05	b.44.2.1,d.250.1.1	92089,92090
2gm6A	208	54.06		
2dgmA	466	55.71	c.67.1.6	131508
1ledA	243	56.90	b.29.1.1	24039
1a34A	159	57.42	b.121.7.1	23286
1led	243	58.65		
1w3oA	216	60.74	b.45.1.1	114142
487dH	224	63.42	i.1.1.2	45835
2dt8A	280	63.96		
3cniA	156	69.01		
1r5rA	119	69.36	a.39.2.1	97104
2hzqA	174	75.43		
1q7fA	286	79.50	b.68.9.1	96036
2p3wA	112	80.10		
1rscI	111	80.11	d.73.1.1	118620
2ghsA	326	81.40	b.68.6.1	135209
1azdA	237	84.02	b.29.1.1	24020
2fepA	289	86.14		
1jjtA	228	86.66	d.157.1.1	63139
1xbrA	184	86.95	b.2.5.4	22458