# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cbnA	151	2.860		
1uhvA	500	6.658	b.71.1.2,c.1.8.3	99402,99403
1i6pA	220	10.90	c.53.2.1	61848
1ikpA	613	11.68	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1x3cA	73	13.25	g.37.1.1	121660
1f1gA	154	17.62	b.1.8.1	76153
1nrzA	164	17.88	c.38.1.1	86131
2hqhE	25	19.27		
1oohA	126	20.87	a.39.2.1	93383
1pq4A	291	21.56	c.92.2.2	94995
3bciA	186	23.30		
2hcfA	234	23.88	c.108.1.6	136333
1lcyA	325	34.21	b.36.1.4,b.47.1.1	73834,73835
1ble	163	35.64		
1gweA	503	37.48	e.5.1.1	70667
2fepA	289	38.39		
1b4tA	153	39.92	b.1.8.1	22283
1dgfA	497	42.97	e.5.1.1	42782
2q9kA	151	44.91		
1ow4A	129	45.10	a.39.2.1	93628
1eu3A	210	46.09	b.40.2.2,d.15.6.1	25206,37795
2dsyA	87	48.45		
1xbrA	184	49.37	b.2.5.4	22458
1azvA	153	53.22	b.1.8.1	22247
1vazA	88	56.44	d.245.1.1	100554
1oaiA	59	58.87	a.5.2.3	81255
1ad2A	228	60.95	e.24.1.1	43353
1qvzA	237	62.41	c.23.16.2	96453
2erbA	125	68.11		
1wj2A	78	69.76	g.79.1.1	114689
1hy5A	136	72.08	a.24.11.1	65955
2p3wA	112	72.53		
1gkgA	136	73.72	g.18.1.1,g.18.1.1	70219,70220
1qwlA	505	74.24	e.5.1.1	96483
3bjhA	119	76.57		
3cniA	156	76.58		
1ltlA	279	77.13	b.40.4.11	84701
2p0tA	176	81.79		
1svdM	110	82.02	d.73.1.1	119059