# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x3cA	73	3.666	g.37.1.1	121660
3cbnA	151	4.577		
1ikpA	613	4.778	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1uhvA	500	4.928	b.71.1.2,c.1.8.3	99402,99403
2q9oA	559	7.245		
1svdM	110	8.737	d.73.1.1	119059
1i6pA	220	11.12	c.53.2.1	61848
2gm6A	208	12.47		
2dgkA	452	18.88		
1dr9A	201	26.73	b.1.1.1,b.1.1.3	19762,21684
1rscI	111	27.42	d.73.1.1	118620
1oohA	126	28.13	a.39.2.1	93383
2qmaA	497	30.59		
1jjtA	228	31.90	d.157.1.1	63139
1wj2A	78	34.28	g.79.1.1	114689
2nadA	393	36.76	c.2.1.4,c.23.12.1	30090,31350
2z2nA	299	40.81		
1rblI	109	43.57	d.73.1.1	118599
2p3wA	112	46.06		
2hqhE	25	53.63		
2aukA	190	54.02		
1op4A	159	54.41	b.1.6.1	93397
1ad2A	228	54.61	e.24.1.1	43353
1khiA	176	55.04	b.34.5.2,b.40.4.5	77408,77409
2hzqA	174	55.22		
1s4iA	175	55.42		
1gkgA	136	55.55	g.18.1.1,g.18.1.1	70219,70220
1q7fA	286	56.41	b.68.9.1	96036
2dgmA	466	57.03	c.67.1.6	131508
1a34A	159	60.57	b.121.7.1	23286
2fepA	289	60.76		
2h5gA	463	61.26		
2nacA	393	61.81	c.2.1.4,c.23.12.1	30088,31348
8rucI	123	61.83	d.73.1.1	39629
1a1aA	107	66.95	d.93.1.1	40449
1qfmA	710	71.96	b.69.7.1,c.69.1.4	27673,34641
1pzsA	208	78.04	b.1.8.1	104397
2d0iA	333	84.12		
1go5A	69	84.81	a.5.2.3	65410
2aqqA	164	88.64		
1xbrA	184	89.02	b.2.5.4	22458