# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g47A 990 2.724 2dgkA 452 4.022 2q9oA 559 4.237 1ikpA 613 4.441 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2olrA 540 5.310 c.91.1.1,c.109.1.1 139140,139141 1x3cA 73 6.638 g.37.1.1 121660 3cbnA 151 6.871 1aukA 489 6.879 c.76.1.2 35030 1rwiA 270 7.026 b.68.9.1 97987 1gkgA 136 7.608 g.18.1.1,g.18.1.1 70219,70220 1z6jT 211 8.106 b.1.2.1,b.1.2.1 124527,124528 2nadA 393 8.183 c.2.1.4,c.23.12.1 30090,31350 2dg1A 333 8.201 b.68.6.1 131493 2av4A 162 9.179 2h5gA 463 11.47 2qmaA 497 11.62 1boy 219 12.00 1h6yA 170 13.11 b.18.1.7 70904 1tt7A 330 13.93 b.35.1.2,c.2.1.1 112623,112624 2pia 321 16.00 1accA 735 16.30 f.11.1.1 43828 1p42A 270 16.78 d.14.1.7,d.14.1.7 87754,87755 1jqbA 351 19.38 b.35.1.2,c.2.1.1 77151,77152 1o5oA 221 20.56 c.61.1.1 92509 1ddzA 496 22.18 c.53.2.1,c.53.2.1 33372,33373 1y7bA 542 22.31 b.29.1.23,b.67.2.1 122687,122688 1svdM 110 22.99 d.73.1.1 119059 1i6pA 220 23.01 c.53.2.1 61848 1vluA 468 23.28 c.82.1.1 108864 1yifA 533 24.14 b.29.1.23,b.67.2.1 123283,123284 1sc6A 404 24.47 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1esoA 154 26.00 b.1.8.1 22293 2vduB 450 26.64 1hleA 345 31.91 e.1.1.1 42618 1ed8A 449 34.13 c.76.1.1 34988 1x1iA 752 35.55 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1jmxB 349 35.56 b.69.2.2 66906 1uhvA 500 35.87 b.71.1.2,c.1.8.3 99402,99403 2dgmA 466 38.39 c.67.1.6 131508 1xtlA 175 39.86 1vlyA 338 40.49 b.44.2.1,d.250.1.1 108871,108872 2oqyA 391 41.43 1ur4A 399 42.37 c.1.8.3 113402 1j3bA 529 42.76 c.91.1.1,c.109.1.1 77071,77072 1dcjA 81 45.90 d.68.3.3 59115 1j08A 226 46.09 c.47.1.2,c.47.1.2 83855,83856 1kw3B 292 46.31 d.32.1.3,d.32.1.3 77549,77550 1fm5A 199 47.71 d.169.1.1 42330 2jvuA 104 50.28 2fafA 608 50.28 3bciA 186 51.71 1gz8A 299 52.57 d.144.1.7 83405 2er7E 330 54.57 b.50.1.2 26779 1r62A 160 55.37 d.122.1.3 104816 1eejA 216 56.90 c.47.1.9,d.17.3.1 33057,38071 1jmxA 494 57.08 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2r6fA 972 58.36 1pjxA 314 59.43 b.68.6.1 104167 2p3wA 112 60.19 3cniA 156 60.70 1dr9A 201 60.74 b.1.1.1,b.1.1.3 19762,21684 1htyA 1015 62.14 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1g6sA 427 65.31 d.68.2.2 39584 3biaX 116 69.24 1hrdA 449 69.46 c.2.1.7,c.58.1.1 30219,33867 1wj2A 78 69.79 g.79.1.1 114689 2qz7A 194 69.89 2ap1A 327 69.94 c.55.1.10,c.55.1.10 127108,127109 1jjtA 228 71.18 d.157.1.1 63139 1anjA 446 71.79 c.76.1.1 35008 2hqhE 25 74.74 1rscI 111 75.25 d.73.1.1 118620 2hzqA 174 76.02 1lcyA 325 76.10 b.36.1.4,b.47.1.1 73834,73835 1e1dA 553 76.64 e.26.1.1 43363 1lckA 175 77.17 b.34.2.1,d.93.1.1 24552,40421 2d5lA 706 77.50 1f97A 212 77.58 b.1.1.1,b.1.1.4 19763,21764 1je3A 97 78.21 d.68.3.3 71637 2qhkA 174 78.96 1adeA 431 79.60 c.37.1.10 32213 2cjtA 131 80.00 b.7.1.1 130549 2he2A 102 81.00 1uh4A 637 81.08 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1bmv1 198 81.17 1oc0A 379 81.62 e.1.1.1 86790 1t1gA 364 82.56 c.41.1.2 106246 1vioA 243 82.81 d.265.1.3,d.66.1.5 100762,100763 1po0A 751 82.96 f.4.3.3 94960 6mhtA 327 86.80 c.66.1.26 34226 2e01A 457 87.43 1n6eA 1071 87.84 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152