# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uhvA	500	1.917	b.71.1.2,c.1.8.3	99402,99403
1x3cA	73	2.673	g.37.1.1	121660
2q9oA	559	3.402		
1ikpA	613	3.524	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
3cbnA	151	6.752		
1svdM	110	8.650	d.73.1.1	119059
1i6pA	220	10.77	c.53.2.1	61848
2nadA	393	12.01	c.2.1.4,c.23.12.1	30090,31350
2dgkA	452	13.02		
1ad2A	228	17.31	e.24.1.1	43353
2aukA	190	22.78		
2qmaA	497	24.92		
2gm6A	208	26.30		
1gkgA	136	26.94	g.18.1.1,g.18.1.1	70219,70220
1oohA	126	27.84	a.39.2.1	93383
2hqhE	25	33.27		
1rscI	111	33.81	d.73.1.1	118620
2z2nA	299	34.19		
2p3wA	112	34.19		
1dr9A	201	38.53	b.1.1.1,b.1.1.3	19762,21684
2nacA	393	39.66	c.2.1.4,c.23.12.1	30088,31348
8rucI	123	42.22	d.73.1.1	39629
1q7fA	286	44.02	b.68.9.1	96036
2fepA	289	44.13		
1i2aA	219	46.15	e.24.1.1	90660
1wj2A	78	46.20	g.79.1.1	114689
1led	243	48.21		
1ledA	243	53.87	b.29.1.1	24039
2hzqA	174	54.24		
1rblI	109	55.84	d.73.1.1	118599
1op4A	159	56.50	b.1.6.1	93397
1a34A	159	57.72	b.121.7.1	23286
1jjtA	228	57.93	d.157.1.1	63139
487dH	224	58.40	i.1.1.2	45835
1aukA	489	59.57	c.76.1.2	35030
2dgmA	466	61.36	c.67.1.6	131508
3bciA	186	66.17		
2j67A	178	66.58		
1u61A	138	72.84	a.149.1.1	107696
2cjtA	131	76.86	b.7.1.1	130549
1go5A	69	83.58	a.5.2.3	65410
1bihA	395	86.96	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
2v2fF	390	87.51		
2b1yA	104	89.23	b.156.1.1	127684