# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x3cA	73	2.752	g.37.1.1	121660
1ikpA	613	4.334	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1uhvA	500	6.088	b.71.1.2,c.1.8.3	99402,99403
2dgkA	452	6.134		
2gm6A	208	9.605		
3cbnA	151	14.64		
1ad2A	228	14.72	e.24.1.1	43353
1svdM	110	14.77	d.73.1.1	119059
2qmaA	497	16.38		
1gkgA	136	16.39	g.18.1.1,g.18.1.1	70219,70220
2dgmA	466	17.28	c.67.1.6	131508
3bciA	186	24.76		
1i6pA	220	25.86	c.53.2.1	61848
1op4A	159	26.31	b.1.6.1	93397
1dr9A	201	31.12	b.1.1.1,b.1.1.3	19762,21684
1aukA	489	35.11	c.76.1.2	35030
1a34A	159	36.66	b.121.7.1	23286
2v2fF	390	36.94		
1fnlA	175	37.48	b.1.1.4,b.1.1.4	21783,21784
1oohA	126	41.72	a.39.2.1	93383
1ledA	243	45.22	b.29.1.1	24039
1ii2A	524	47.26	c.91.1.1,c.109.1.1	66146,66147
487dH	224	47.64	i.1.1.2	45835
1led	243	47.68		
2aukA	190	48.47		
2hqhE	25	50.82		
2nadA	393	51.46	c.2.1.4,c.23.12.1	30090,31350
1xbrA	184	54.13	b.2.5.4	22458
2z2nA	299	56.52		
1pq4A	291	57.16	c.92.2.2	94995
2ghsA	326	59.02	b.68.6.1	135209
1j3bA	529	64.26	c.91.1.1,c.109.1.1	77071,77072
1i2aA	219	64.75	e.24.1.1	90660
1uw0A	117	68.60	g.39.1.12	108063
1jjtA	228	68.72	d.157.1.1	63139
1vpvA	300	69.32	c.119.1.1	113975
2nmxA	260	69.78	b.74.1.1	138382
1nrkA	328	70.24	b.44.2.1,d.250.1.1	92089,92090
1bihA	395	70.45	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
1wj2A	78	70.68	g.79.1.1	114689
1rscI	111	71.91	d.73.1.1	118620
1xtoA	311	76.73	d.157.1.6	116030
2olrA	540	79.13	c.91.1.1,c.109.1.1	139140,139141
2p3wA	112	81.34		
1keqA	248	84.89	b.74.1.1	72387
2dg1A	333	85.29	b.68.6.1	131493
1rblI	109	86.18	d.73.1.1	118599