# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x3cA	73	2.052	g.37.1.1	121660
1ikpA	613	2.652	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1ad2A	228	6.518	e.24.1.1	43353
3cbnA	151	9.844		
1svdM	110	10.63	d.73.1.1	119059
1uhvA	500	15.00	b.71.1.2,c.1.8.3	99402,99403
2dgkA	452	16.39		
1i6pA	220	19.11	c.53.2.1	61848
1oohA	126	23.10	a.39.2.1	93383
2z2nA	299	23.13		
487dH	224	23.58	i.1.1.2	45835
1wj2A	78	27.23	g.79.1.1	114689
2hqhE	25	32.00		
1i2aA	219	33.31	e.24.1.1	90660
2qmaA	497	36.58		
1dr9A	201	37.09	b.1.1.1,b.1.1.3	19762,21684
1gkgA	136	38.75	g.18.1.1,g.18.1.1	70219,70220
1a34A	159	39.25	b.121.7.1	23286
2gm6A	208	39.95		
2aukA	190	41.66		
1xbrA	184	48.03	b.2.5.4	22458
1nrkA	328	48.15	b.44.2.1,d.250.1.1	92089,92090
2d7eA	105	50.00		
1pq4A	291	54.22	c.92.2.2	94995
1op4A	159	57.33	b.1.6.1	93397
2dgmA	466	58.12	c.67.1.6	131508
1aukA	489	58.59	c.76.1.2	35030
1jjtA	228	58.82	d.157.1.1	63139
1s4iA	175	58.90		
3bjhA	119	59.79		
2frvB	536	61.13	e.18.1.1	43291
1rscI	111	64.06	d.73.1.1	118620
2nadA	393	65.36	c.2.1.4,c.23.12.1	30090,31350
1led	243	69.41		
3bciA	186	73.47		
2p3wA	112	79.48		
1rblI	109	81.38	d.73.1.1	118599
1ledA	243	81.78	b.29.1.1	24039
3brgC	427	81.79		
2v2fF	390	82.47		
1bmv1	198	82.75		
8rucI	123	85.49	d.73.1.1	39629
1vpvA	300	87.91	c.119.1.1	113975