# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ikpA	613	2.061	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1x3cA	73	3.288	g.37.1.1	121660
1uhvA	500	5.999	b.71.1.2,c.1.8.3	99402,99403
3cbnA	151	11.31		
1ad2A	228	14.21	e.24.1.1	43353
1i6pA	220	15.83	c.53.2.1	61848
2dgkA	452	16.96		
1svdM	110	17.04	d.73.1.1	119059
1op4A	159	22.90	b.1.6.1	93397
1jjtA	228	25.61	d.157.1.1	63139
1a34A	159	25.98	b.121.7.1	23286
1gkgA	136	26.15	g.18.1.1,g.18.1.1	70219,70220
3bciA	186	32.35		
2aukA	190	34.88		
1ifrA	121	35.09	b.1.16.1	71203
1dr9A	201	36.37	b.1.1.1,b.1.1.3	19762,21684
1xbrA	184	37.39	b.2.5.4	22458
1oohA	126	39.13	a.39.2.1	93383
2p3wA	112	39.45		
2qmaA	497	42.48		
2dgmA	466	47.26	c.67.1.6	131508
2z2nA	299	50.62		
1nrkA	328	53.20	b.44.2.1,d.250.1.1	92089,92090
1aukA	489	53.42	c.76.1.2	35030
2nadA	393	54.30	c.2.1.4,c.23.12.1	30090,31350
2gm6A	208	54.64		
1wj2A	78	57.51	g.79.1.1	114689
1khiA	176	58.12	b.34.5.2,b.40.4.5	77408,77409
1rscI	111	58.77	d.73.1.1	118620
487dH	224	59.59	i.1.1.2	45835
2hqhE	25	61.00		
1i2aA	219	61.39	e.24.1.1	90660
2frvB	536	62.14	e.18.1.1	43291
3brgC	427	71.01		
1rblI	109	73.56	d.73.1.1	118599
3bjhA	119	74.80		
1fnlA	175	76.69	b.1.1.4,b.1.1.4	21783,21784
1q7fA	286	85.45	b.68.9.1	96036
1vpvA	300	87.43	c.119.1.1	113975
8rucI	123	88.70	d.73.1.1	39629