# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ikpA	613	1.429	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
2aj7A	163	3.015	b.158.1.1	126842
1i6pA	220	7.418	c.53.2.1	61848
1bihA	395	8.731	b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4	21752,21753,21754,21755
2atjA	308	10.05	a.93.1.1	18675
2bjfA	329	12.44		
2gm6A	208	13.32		
3cbnA	151	14.65		
2hqhE	25	15.48		
1ltlA	279	15.73	b.40.4.11	84701
1svdM	110	16.46	d.73.1.1	119059
1ay1H	213	22.15	b.1.1.1,b.1.1.2	20243,21255
1ad2A	228	27.53	e.24.1.1	43353
2fepA	289	28.34		
1wj2A	78	29.82	g.79.1.1	114689
1pq4A	291	31.20	c.92.2.2	94995
2v2fF	390	32.41		
7atjA	308	32.56	a.93.1.1	18673
2nmxA	260	32.95	b.74.1.1	138382
1uhvA	500	35.26	b.71.1.2,c.1.8.3	99402,99403
2p3wA	112	35.94		
2a19A	175	36.15		
1f1gA	154	41.09	b.1.8.1	76153
3cddA	361	41.52		
1keqA	248	41.77	b.74.1.1	72387
1xtoA	311	45.06	d.157.1.6	116030
1cfyA	143	46.78	d.109.1.2	40858
1rwiA	270	48.64	b.68.9.1	97987
1vioA	243	51.17	d.265.1.3,d.66.1.5	100762,100763
2pytA	133	51.54		
1khiA	176	53.87	b.34.5.2,b.40.4.5	77408,77409
1pz1A	333	55.97	c.1.7.1	95390
1hy5A	136	59.62	a.24.11.1	65955
2o02A	230	60.78		
3cniA	156	61.32		
1qgjA	300	62.31	a.93.1.1	18691
487dH	224	71.49	i.1.1.2	45835
1schA	294	71.73	a.93.1.1	18685
1lylA	504	71.82	b.40.4.1,d.104.1.1	25261,40717
1yloA	348	72.02	b.49.3.1,c.56.5.4	123659,123660
1sqjA	789	72.67	b.69.13.1,b.69.13.1	105918,105919
1b4tA	153	74.28	b.1.8.1	22283
1yo1A	260	75.32		
1x3cA	73	79.58	g.37.1.1	121660
2qvpA	275	81.28		
1f97A	212	81.29	b.1.1.1,b.1.1.4	19763,21764
1fr7A	260	81.77	b.74.1.1	27828
1dr9A	201	83.87	b.1.1.1,b.1.1.3	19762,21684
2rikA	284	84.44		
2qy0A	159	84.58		
1gweA	503	88.56	e.5.1.1	70667