# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1i6pA	220	2.357	c.53.2.1	61848
1uhvA	500	6.381	b.71.1.2,c.1.8.3	99402,99403
3cbnA	151	7.617		
1lfpA	249	7.818	e.39.1.1	73885
1o12A	376	8.846	b.92.1.5,c.1.9.10	80758,80759
2nytA	190	9.846		
2i5hA	205	10.83		
1y1oA	203	12.24	c.52.1.28	116345
2c60A	111	14.95	d.15.2.2	129966
1xpiA	231	17.39		
1lrzA	426	19.29	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
2bfgA	503	20.93	b.71.1.2,c.1.8.3	128423,128424
2r7hA	177	23.17		
1es6A	296	23.20	b.31.1.1,b.31.1.1	83048,83049
1konA	249	28.69	e.39.1.1	72823
2f9hA	129	29.03	b.161.1.1	133162
2hcuA	213	31.92		
1sgvA	316	32.07	b.122.1.1,d.265.1.2	98858,98859
2gzvA	114	33.46		
1wdiA	345	34.14	e.53.1.1	114535
1v9kA	228	34.46	d.265.1.3	108449
1vjqA	79	35.02	k.43.1.1	100830
2nptB	100	36.25	d.15.2.2	138449
1sbxA	106	38.60	a.6.1.4	105414
1ihnA	113	38.75	c.103.1.1	62388
1mw7A	240	40.31	e.39.1.1	79557
1x6oA	174	43.25	b.34.5.2,b.40.4.5	109493,109494
1bkb	136	44.26		
2gzsA	278	47.80		
2jmkA	111	48.21		
1oa2A	218	51.60	b.29.1.11	86721
2qg1A	92	54.00		
1eagA	342	55.49	b.50.1.2	26826
3cnqP	80	60.22		
1xtoA	311	61.46	d.157.1.6	116030
1lvwA	295	62.42	c.68.1.6	84723
2f1fA	164	63.47	d.58.18.6,d.58.18.6	132760,132761
1ed1A	135	63.82	a.61.1.1	18130
1khiA	176	65.08	b.34.5.2,b.40.4.5	77408,77409
1c93A	265	66.11	c.1.8.5	28998
2fsuA	210	70.58		
1g99A	408	70.66	c.55.1.2,c.55.1.2	33457,33458
2gruA	368	74.24		
1zosA	230	74.96		
1scjB	71	75.05	d.58.3.2	39069
1ihjA	98	75.24	b.36.1.1	62382
2q18X	293	81.00		
2g3aA	152	81.37	d.108.1.1	134557
1wmhA	89	82.04	d.15.2.2	114744
1lf2A	331	82.32	b.50.1.2	77914
2bs9A	503	82.97	b.71.1.2,c.1.8.3	129062,129063
1bxoA	323	84.16	b.50.1.2	26805
1zyoA	191	85.47		
1fuiA	591	87.21	b.43.2.1,c.85.1.1	25674,35444
1wpgA	994	89.11	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809