# List of top-scoring protein chains for T0514.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wniA	201	2.373	d.92.1.9	109435
1kufA	203	4.897	d.92.1.9	73007
1kugA	203	6.322	d.92.1.9	73008
1t1iA	364	11.31	c.41.1.2	106248
1pa2A	306	12.48	a.93.1.1	18693
1t1gA	364	20.50	c.41.1.2	106246
1t1eA	552	21.63	c.41.1.2,d.58.3.2	106244,106245
1gt91	357	21.67		
1zvjA	364	23.10		
1sioA	364	23.17	c.41.1.2	98888
1qgjA	300	37.73	a.93.1.1	18691
1wzvA	155	37.83	d.20.1.1	121529
1gwoA	309	37.87	a.93.1.1	83349
1gwuA	309	38.77	a.93.1.1	83351
1gw2A	308	40.98	a.93.1.1	83341
1gwtA	309	41.07	a.93.1.1	83350
2atjA	308	43.54	a.93.1.1	18675
7atjA	308	44.24	a.93.1.1	18673
1hchA	306	44.24	a.93.1.1	70965
1w4wA	323	45.19	a.93.1.1	120640
1gx2A	309	47.40	a.93.1.1	83360
4atjA	309	52.29	a.93.1.1	81266
1h4eA	201	52.90	c.68.1.8	83483
2z4dA	96	53.39		
1zvkA	358	56.47		
1siuA	364	57.64	c.41.1.2	98891
1l1oC	181	59.06	b.40.4.3	73480
2sliA	679	59.34	b.29.1.9,b.68.1.1	24274,27611
1hjjA	201	65.05	c.68.1.8	83487
1ufgA	151	65.91	b.1.16.1	107814
1kzmA	308	65.94	a.93.1.1	77637
1hjlA	201	66.28	c.68.1.8	83488
1fr9A	194	67.31	c.68.1.8	34579
1e5kA	201	67.55	c.68.1.8	34578
1h4dA	201	68.40	c.68.1.8	83482
1h4cA	201	69.19	c.68.1.8	83481
1i1nA	226	69.74	c.66.1.7	71102
1ikpA	613	74.68	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1ikqA	613	76.34	b.29.1.7,d.166.1.1,f.1.5.1	66185,66186,66187
2jzaA	130	78.14		
1c4zD	154	83.35	d.20.1.1	38331
2v36A	376	83.63		
1wpbA	172	87.11	a.233.1.1	114783
2cn3A	737	89.57