# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cbnA	151	6.492		
1s4iA	175	6.773		
1fzyA	149	9.188	d.20.1.1	65072
1o7jA	327	10.07	c.88.1.1	81140
1xtmA	175	10.20		
2awfA	172	11.55	d.20.1.1	127432
2nt0A	497	14.85	b.71.1.2,c.1.8.3	138561,138562
3ddjA	296	18.22		
2a4dA	160	18.58	d.20.1.1	126152
1x6oA	174	21.38	b.34.5.2,b.40.4.5	109493,109494
1zuoA	186	21.89	d.20.1.1	125680
2fafA	608	23.92		
1bkb	136	23.94		
4pgaA	337	25.16	c.88.1.1	35565
2c36A	285	26.97		
1z2uA	150	27.78	d.20.1.1	124389
2j5bA	348	29.21		
1khbA	625	31.71	c.91.1.1,c.109.1.1	68606,68607
3bzhA	194	31.73		
1jatA	155	32.04	d.20.1.1	62818
1oohA	126	32.19	a.39.2.1	93383
1esoA	154	35.15	b.1.8.1	22293
1tovA	98	36.54	b.34.10.1	107179
2gjdA	157	36.61		
1x3cA	73	38.04	g.37.1.1	121660
2z0jA	237	41.18		
2vqeI	128	45.62		
1u9aA	160	50.09	d.20.1.1	38333
1up9A	107	50.14	a.138.1.1	113390
1wzvA	155	50.81	d.20.1.1	121529
1nnsA	326	51.56	c.88.1.1	85910
1pzsA	208	51.82	b.1.8.1	104397
1q46A	175	53.80	a.60.14.1,b.40.4.5	111594,111595
1i7kA	179	57.43	d.20.1.1	61889
2owlA	303	60.38		
1y8xA	160	60.68	d.20.1.1	122769
3c0fB	91	63.60		
1khiA	176	63.73	b.34.5.2,b.40.4.5	77408,77409
1qfjA	232	64.97	b.43.4.2,c.25.1.1	25655,31545
3c3bA	420	67.98		
2bzgA	232	68.74	c.66.1.36	129559
2snsA	149	72.19	b.40.1.1	24860
2gb4A	252	73.29		
2onuA	152	73.39		
1f1gA	154	74.36	b.1.8.1	76153
2uubI	128	74.88		
2p3wA	112	77.39		
2r76A	152	81.83		
1gkrA	458	83.54	b.92.1.3,c.1.9.6	70251,70252
1zdnA	158	84.07	d.20.1.1	124943
2himA	358	85.45