# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bkb	136	8.194		
1x6oA	174	9.396	b.34.5.2,b.40.4.5	109493,109494
3cbnA	151	10.88		
1s4iA	175	13.37		
1fzyA	149	14.78	d.20.1.1	65072
1o7jA	327	14.88	c.88.1.1	81140
1xtmA	175	18.48		
2j5bA	348	18.66		
2fafA	608	21.40		
1zuoA	186	22.20	d.20.1.1	125680
1khbA	625	24.18	c.91.1.1,c.109.1.1	68606,68607
2c5qA	240	25.43		
1x3cA	73	25.85	g.37.1.1	121660
1gyhA	318	29.67	b.67.2.1	70757
2snsA	149	31.82	b.40.1.1	24860
2awfA	172	32.38	d.20.1.1	127432
1qfjA	232	33.72	b.43.4.2,c.25.1.1	25655,31545
1bkbA	136	35.08	b.34.5.2,b.40.4.5	24609,25341
1ii2A	524	36.01	c.91.1.1,c.109.1.1	66146,66147
1tovA	98	36.35	b.34.10.1	107179
1khiA	176	37.33	b.34.5.2,b.40.4.5	77408,77409
2c36A	285	40.79		
1y42X	392	44.28		
1oohA	126	46.00	a.39.2.1	93383
1z9nA	177	46.46		
2b5nA	323	47.12		
1uv4A	293	47.84	b.67.2.1	119705
1esoA	154	48.46	b.1.8.1	22293
2a4dA	160	49.15	d.20.1.1	126152
4pgaA	337	49.70	c.88.1.1	35565
2qf2A	624	52.15		
1pzsA	208	55.39	b.1.8.1	104397
2r76A	152	58.46		
2aqpA	164	58.59		
1z2uA	150	60.07	d.20.1.1	124389
3bzhA	194	60.78		
2himA	358	61.63		
1nnsA	326	62.10	c.88.1.1	85910
3c0fB	91	64.25		
1jmxA	494	64.82	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1jatA	155	64.90	d.20.1.1	62818
2owlA	303	65.71		
2p3wA	112	66.56		
2nt0A	497	67.35	b.71.1.2,c.1.8.3	138561,138562
3cegA	323	68.13		
2glzA	153	68.57	d.81.3.1	135348
1wlsA	328	71.19		
2qxlA	658	71.79		
2a7lA	136	72.78	d.20.1.1	126350
1earA	147	76.56	b.107.1.1,d.58.38.1	64875,64876
1f1gA	154	85.97	b.1.8.1	76153
1xf1A	926	86.17		
2gjdA	157	86.23		
1gkrA	458	89.40	b.92.1.3,c.1.9.6	70251,70252