# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fafA 608 4.127 1x6oA 174 8.280 b.34.5.2,b.40.4.5 109493,109494 1o7jA 327 8.840 c.88.1.1 81140 2b5nA 323 10.33 1khbA 625 11.49 c.91.1.1,c.109.1.1 68606,68607 1x3cA 73 11.95 g.37.1.1 121660 1uv4A 293 12.70 b.67.2.1 119705 3cbnA 151 13.40 1gyhA 318 18.53 b.67.2.1 70757 1bkb 136 20.20 1s4iA 175 20.56 1fzyA 149 23.88 d.20.1.1 65072 1o12A 376 24.42 b.92.1.5,c.1.9.10 80758,80759 4pgaA 337 24.52 c.88.1.1 35565 2glzA 153 28.68 d.81.3.1 135348 2j5bA 348 30.25 1pzsA 208 30.46 b.1.8.1 104397 1jmxA 494 30.78 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1xtmA 175 31.42 2a7lA 136 32.41 d.20.1.1 126350 1r45A 204 34.11 d.166.1.1 111683 1eejA 216 35.61 c.47.1.9,d.17.3.1 33057,38071 1oohA 126 36.83 a.39.2.1 93383 1mla 309 37.74 1nnsA 326 40.97 c.88.1.1 85910 3brgC 427 41.12 1dy9A 187 42.32 b.47.1.3 26400 1vpvA 300 42.37 c.119.1.1 113975 1mlaA 309 42.78 c.19.1.1,d.58.23.1 31031,39383 1ne9A 335 42.87 d.108.1.4,d.108.1.4 91839,91840 1ad2A 228 43.76 e.24.1.1 43353 1tca 317 45.74 1ypqA 135 46.62 d.169.1.1 123833 1ijqA 316 48.12 b.68.5.1,g.3.11.1 62506,62507 1yifA 533 49.28 b.29.1.23,b.67.2.1 123283,123284 1jofA 365 49.28 b.69.10.1 71775 1bxoA 323 49.70 b.50.1.2 26805 1gmuA 143 49.90 b.107.1.1,d.58.38.1 65335,65336 1i1nA 226 50.41 c.66.1.7 71102 2bsfA 176 50.94 1esoA 154 51.49 b.1.8.1 22293 3cegA 323 53.09 1r5lA 262 53.56 a.5.3.1,c.13.1.1 97099,97100 2c5qA 240 56.22 1tovA 98 56.23 b.34.10.1 107179 2jdxA 385 56.74 d.126.1.2 41139 1g61A 228 56.79 d.126.1.1 41126 2as0A 396 57.01 b.122.1.9,c.66.1.51 127227,127228 3b47A 134 57.94 1y9lA 115 58.15 1f1gA 154 59.64 b.1.8.1 76153 1jsdB 176 59.74 h.3.1.1 63259 1rfeA 162 61.69 b.45.1.1 111796 2fg9A 178 61.81 b.45.1.1 133426 3psgA 370 65.46 b.50.1.2 26841 1ok8A 394 65.99 b.1.18.4,f.10.1.1 93236,93237 2i6vA 87 68.87 2aqpA 164 69.77 2awfA 172 70.52 d.20.1.1 127432 2c36A 285 70.53 2d1kC 32 70.86 1q46A 175 71.66 a.60.14.1,b.40.4.5 111594,111595 2z0jA 237 73.79 1hq8A 123 74.97 d.169.1.1 61127 1ii2A 524 76.54 c.91.1.1,c.109.1.1 66146,66147 2fr2A 172 78.04 b.60.1.8 133963 2ra6A 166 78.52 1zuoA 186 78.66 d.20.1.1 125680 2gjdA 157 81.94 1fnlA 175 86.84 b.1.1.4,b.1.1.4 21783,21784 1vqoT 120 87.28 b.34.5.1 120381 1v8hA 107 87.46 b.1.18.19 119870 1jsmB 176 88.32 h.3.1.1 63265 2g1lA 104 88.41 b.26.1.2 134520 1pfsA 78 88.77 b.40.4.7 25391 1hdiA 413 89.47 c.86.1.1 60964 2eifA 136 89.52 b.34.5.2,b.40.4.5 24607,25339